BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497114
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12870.1 | Symbols: | Gamma interferon responsive lysosomal... 1120 0.0
AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal... 610 6e-174
AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal... 603 1e-171
AT4G12960.2 | Symbols: GILT, AtGILT | Gamma interferon responsi... 340 9e-93
> AT4G12870.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7542233-7543474
FORWARD LENGTH=795
Length=795
Score = 1120 bits (606), Expect = 0.0
Identities = 717/771 (93%), Gaps = 6/771 (1%)
Strand=Plus/Plus
Query 1 CTCACTCTTAGTACAAATATTTTCAACAATGGTTTCTTCTTCTTCTTCAACCAAGCTTGT 60
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 25 CTCACTCTTAGTACAAATATTTTCAAGAATGGTTTCTCCTTCTTTTTCAACCAAGCTTGT 84
Query 61 CTTCTTTACTTGCTTTGTTCTGTTCACATTCTCAGACAAACTCGTTG-CTGGAGAATCCG 119
||||||| |||||||||||||||||||||||||| ||||||||| || | ||||||||||
Sbjct 85 CTTCTTTGCTTGCTTTGTTCTGTTCACATTCTCACACAAACTCG-TGACAGGAGAATCCG 143
Query 120 ACAAAGTTCAGCTCAATCTTTACTATGAATCACTTTGTCCCGGTTGTCAGAGATTCATCG 179
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 144 ACAAAGTTGAGCTCAATCTTTACTACGAATCACTTTGTCCCGGTTGTCAGAGTTTCATCG 203
Query 180 TCGATGAACTAGTCAAAATCTTTGACTCCGATCTCGATACAATCACCGATGTCAAGCTCG 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TCGATGAACTAGTCAAAGTCTTTGACTCCGATCTCGATACAATCACCGATGTCAAGCTCG 263
Query 240 TTCCATTCGGTAATGCCAAAGTCTCCAATAATCTGACTGTCATTTGCCAGCATGGTGAAG 299
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 264 TTCCATTCGGTTACGCCAAAGTCTCCAATAATCTGACCGTCATTTGCCAGCATGGTGAAG 323
Query 300 AGGAATGCAAACTAAACGCTCTTGAAGCTTGCGTCATAAACACTTTGCCTAACCAGAAAT 359
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 324 AGGAATGCAAACTCAACGCTCTTGAAGCTTGCGTCATTAACACTTTGCCTAACCCGAAAT 383
Query 360 TGCAGTACCAGTTCATACGGTGCGTTGAAAACTATACCAAAAACTGGGAATCATCATGTT 419
||||||| |||||||||| |||||||||||| |||| | |||||||||||||||||||
Sbjct 384 CGCAGTACAAGTTCATACGATGCGTTGAAAACAATACGGATAACTGGGAATCATCATGTT 443
Query 420 TAAATGGATATGGAGATGAGAAAGCCATCAATGATTGTTACAACAGTGATCTCTCTAAAA 479
|||| || |||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 444 TAAAGGGCTATGGAAATGAGAAAGCCATCAATGATTGTTACAATAGTGATCTCTCTAAGA 503
Query 480 AGCTCATACTTGGGTATGCAAAACAAACCTCGAGTCTAAAGCCGGAACATGAATTCGTAC 539
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 504 AGCTCATACTTGGATATGCAAAACAAACCTCGAGTCTTAAGCCGAAACATGAATTCGTAC 563
Query 540 CATGGGTCACACTCAACAGCAAACCACTCTATACTAATCTAGATGATCTGGTGGGCCAAG 599
||||||||||| |||||||||||||||||||||| || ||||||||| ||||||| ||||
Sbjct 564 CATGGGTCACAATCAACAGCAAACCACTCTATACGAAACTAGATGATTTGGTGGGTCAAG 623
Query 600 TCTGCAAAGCTTACAAAGGAAAGACTCCACTCCCAAAA-ATCTGTAGTTCCTCTGCCTTG 658
|||||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||
Sbjct 624 TCTGCAAAGCTTACAAAGGAAAGACTCCACTCCCAATAGA-CTGTAGTTCCGCTGCCTTG 682
Query 659 TCGGAGTGGAAAATGTCGAA-GCTTGAATTCTCGTATGTCGATGAAACTATCAATCACTA 717
|| ||| ||||||||||||| | |||||||||| ||||| ||||||| ||||| ||||||
Sbjct 683 TCCGAGAGGAAAATGTCGAATG-TTGAATTCTCCTATGTAGATGAAATTATCAGTCACTA 741
Query 718 AGTTAATTATCAAACCACTAAGATGAATAATTAAATAAAGACCTTATTTCT 768
||||||| || |||| ||||||||||||||||||||||||||||||| |||
Sbjct 742 AGTTAATAATAAAACTACTAAGATGAATAATTAAATAAAGACCTTATCTCT 792
> AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7548820-7549974
FORWARD LENGTH=724
Length=724
Score = 610 bits (330), Expect = 6e-174
Identities = 594/719 (83%), Gaps = 28/719 (4%)
Strand=Plus/Plus
Query 34 TTCTTC-TT--CTTCTTCAACCAAGCTTGTCTTCTTTACTTGCTTTGTTCTGTTCACATT 90
|||||| || ||||||||||||||||||| |||||| ||||| | | || ||||||||
Sbjct 12 TTCTTCGTTGGCTTCTTCAACCAAGCTTGTATTCTTTGCTTGCCTCCTCCTATTCACATT 71
Query 91 CTCA-GACA-AA-CTCGTTGCTGGAGAATCCGACAAAGTTCAGCTCAATCTTTACTATGA 147
|||| ||| || ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 72 CTCATCACACAATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTATGA 131
Query 148 ATCACTTTGTCCCGGTTGTCAGAGATT-CATCGTCGATGAACTAGTCAAAATCTTTGACT 206
|||||||||||| |||||||| ||| ||||||| || | |||| |||||||||| ||
Sbjct 132 ATCACTTTGTCCTTCTTGTCAGA-ATTTCATCGTCCATCATCTAGGCAAAATCTTTAACA 190
Query 207 CCGATCTCGATACAATCACCGATGTCAAGCTCGTTCCATTCGGTAATGCCAAAGTCTCCA 266
| |||||| | |||||||||||| |||||||| ||||||||||||| ||| | ||||||
Sbjct 191 CTGATCTCCACACAATCACCGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTCCG 250
Query 267 ATAATCTGACTGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCTCTTGAAG 326
|| |||| || |||| |||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 251 ATGATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGAAG 310
Query 327 CTTGCGTCATAA-ACACTTTGCCTAACCAGAAATTGCAGTACCAGTTCATACGGTGCGTT 385
|||||| ||||| | |||| |||||| |||| |||||| ||| ||||||| |||||||||
Sbjct 311 CTTGCGCCATAAGA-ACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGTT 369
Query 386 GAAAACTATAC-CAAAAACT-GGGAATCATCATGTTTA-AATGGATATGGAGATGAGAAA 442
|||| ||| || | || || ||||||| | |||| | || | ||||||| ||| |||
Sbjct 370 GAAA-CTA-ACACGAATGCTTGGGAATCTTG-TGTTAAGAA-G--TATGGAGGTGAAAAA 423
Query 443 GCCATCAATGATTGTTACAACAGTGATCTCTCTAAAAAGCTCATACTTGGGTATGCAAAA 502
|| || |||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 424 GCGATAAATGATTGTTACAATGGTGATCTCTCTAAAGAGCTGATACTTGGGTATGCAAAC 483
Query 503 CAAACCTCGAGTCT-AAAGCCGGAACATGAATTCGTACCATGGGTCACACTCAACAGCAA 561
|| || | |||| | ||| ||||| ||| ||| |||||||||| | ||||||||| || |
Sbjct 484 CAGACATTGAGTTTGAAA-CCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGA 542
Query 562 ACCACTCTAT-ACTAATCTAGATGATCTGGTGGGCCAAGTCTGCAAAGCTTACAAAGGAA 620
||||||||| | ||| | | |||| | |||| | |||||||||||| || |||||||
Sbjct 543 ACCACTCTACGAA-AATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCGTATAAAGGAA 601
Query 621 AGACTCCACTCCCAAAAATCTGT-AGTTCCTCTGCCTTGTCGGAGTGGAAAATGTCGAAG 679
|| || | ||||| ||| ||||| | |||||||| |||||| || ||| |||| | |
Sbjct 602 AGGCTGCTCTCCCTAAACTCTGTTA-TTCCTCTGTCTTGTCTCAGAGGACAATG---ATG 657
Query 680 CTTGAATTCTCGTATGTCGATGAAACTATCAATCACTAAGTTAATTATCAAACCACTAA 738
||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||
Sbjct 658 CTTGAATTCTCCTATGTTGATGAAGCTATCAATCACTAAGTTAATTATCATACTACTAA 716
> AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7546377-7547641
FORWARD LENGTH=898
Length=898
Score = 603 bits (326), Expect = 1e-171
Identities = 579/695 (83%), Gaps = 41/695 (6%)
Strand=Plus/Plus
Query 58 TGTCTTCT-TTA-CTTGCTTTGTTC-TGTTCACATTCTCAGACAAACTCGT--T-GCTGG 111
|||||| | ||| ||||| | ||| ||||||||| |||| |||| ||||| | ||| |
Sbjct 77 TGTCTTTTCTTAGCTTGC-CTCTTCGTGTTCACATACTCAAACAACCTCGTCGTGGCT-G 134
Query 112 AGAA-TCCGACAAAGTTCAGCTCAATCTTTACTATGAATCACTTTGTCCCGGTTGTCAGA 170
| || ||| ||||||| || ||||||||||||||||||||||||||||| |||||| |
Sbjct 135 AAAATTCCAACAAAGTGAAGATCAATCTTTACTATGAATCACTTTGTCCCTATTGTCA-A 193
Query 171 GA-TTCATCGTCGATGAACTA-GTCAAAATCTTTGACTCCGATCTCGAT-ACAATCACCG 227
| ||||| || ||||| ||| || ||||||||||||||||||||| | | ||||||||
Sbjct 194 AATTTCATTGTTGATGATCTAGGT-AAAATCTTTGACTCCGATCTC-CTCAAAATCACCG 251
Query 228 ATGTCAAGCTCGTTCCATTCGGTAATGC-CAAAGTCTCCAATAATCTGACTGTCATTTGC 286
|| |||||||||||||||||||||| || || | ||||||||||||||||| | | ||||
Sbjct 252 ATCTCAAGCTCGTTCCATTCGGTAACGCTCATA-TCTCCAATAATCTGACTATTACTTGC 310
Query 287 CAGCATGGTGAAGAGGAATGCAAACTAAACGCTCTTGAAGCTTGCG-TCATAA-ACACTT 344
|||||||||||||||||||||||||| |||||||| |||||||||| | |||| | ||||
Sbjct 311 CAGCATGGTGAAGAGGAATGCAAACTTAACGCTCTCGAAGCTTGCGGT-ATAAGA-ACTT 368
Query 345 TGCCTAA-CCAGAAATTGCAGTACCAGTTCATACGGTGCGTTGAAAACTATACCAAA-AA 402
|||| | || ||||||||||||| |||||||||| ||||||||||| |||| || ||
Sbjct 369 TGCCCGATCC-GAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAA 427
Query 403 CTGGGAATCATCATGTTTAAATGGATATGGA-GATGAGAAAGCCATCAATGATTGTTACA 461
|||||||||| |||| ||| || |||| | ||||||||||||||||||||||||||
Sbjct 428 -TGGGAATCATG-TGTTAAAAA--ATCTGGACG-TGAGAAAGCCATCAATGATTGTTACA 482
Query 462 ACAGTGATCTCTCTAAAAAGCTCATACTTGGGTATGCAAAACAAACCTCGAGTCTAAAGC 521
| ||||||||||| ||||||| ||||||||||||||||||| ||||||||| | ||||
Sbjct 483 ATGGTGATCTCTCTCAAAAGCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGC 542
Query 522 CGGAACATGAATTCGTACCATGGGTCACACTCAACAGCAAACCACTCTAT-ACTAATCTA 580
| ||||||||| |||||||||||||||||||||| |||||||||||||| || ||| ||
Sbjct 543 CAAAACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC-AAT-TA 600
Query 581 G-ATGATCTGGTGGGC-CAAGTCTGCAAAGCTTACAAAGGAAAG-ACTCCACTCCCAAAA 637
|| || |||| | | |||||||||||||| |||||||||||| | || ||||||||
Sbjct 601 CCATAATTTGGTCG-CACAAGTCTGCAAAGCGTACAAAGGAAAGGA-TC---TCCCAAAA 655
Query 638 ATCTGTAGTTCCTCTGCCTTGTCGGAGTGGAAAATGTCGAAGCTTGAATTCTCGTATGTC 697
| || |||||||| | ||||| ||| ||||| |||| ||| || || |||| |||||
Sbjct 656 CTATGCAGTTCCTCGGTCTTGTATGAGAGGAAAGTGTCAAAGTTTCAAGTCTCCTATGTA 715
Query 698 GATGAAACTATCAATCACTAAGTTAATTATCAAAC 732
|||||| |||||||| | ||||||||||| |||||
Sbjct 716 GATGAAGCTATCAATTAATAAGTTAATTAACAAAC 750
> AT4G12960.2 | Symbols: GILT, AtGILT | Gamma interferon responsive
lysosomal thiol (GILT) reductase family protein | chr4:7583272-7584630
FORWARD LENGTH=979
Length=979
Score = 340 bits (184), Expect = 9e-93
Identities = 283/329 (86%), Gaps = 13/329 (4%)
Strand=Plus/Plus
Query 25 AACAATGGTTTCTTCTTCTTCTTCAACCAAGCTTGTCTTCTTTACTTGCT-TTGTTCTGT 83
|||||||||||||||||| | || |||||||||||| |||||| ||| | | | |||
Sbjct 26 AACAATGGTTTCTTCTTC-T-TT-AACCAAGCTTGTGTTCTTTGGTTG-TCTCCTCCTGC 81
Query 84 TCACATTCTCAGACAAACTCGTTGCTGGAGAATCCGACAAAGTTCAGCTCAATCTTTACT 143
|||||||| | ||||| || || |||||| |||| | |||||| |||||||||||||||
Sbjct 82 TCACATTCACGGACAACCTTGTGGCTGGAAAATCTGGCAAAGTGAAGCTCAATCTTTACT 141
Query 144 ATGAATCACTTTGTCCCGGTTGTCA-GAGATTCATCGTCGATGAACTA-GTCAAAATCTT 201
| ||||||||||||||||||||||| || ||||||||||||||| ||| || ||||||||
Sbjct 142 ACGAATCACTTTGTCCCGGTTGTCAGGA-ATTCATCGTCGATGACCTAGGT-AAAATCTT 199
Query 202 TGACTCCGATCTCGATACAATCACCGATGTCAAGCTCG-TTCCATTCGGTAATGCCAAAG 260
||||| ||||||| | |||||||| ||| ||||||| | ||||||| ||||||||| ||
Sbjct 200 TGACTACGATCTCTACACAATCACTGATCTCAAGCT-GTTTCCATTTGGTAATGCCGAAC 258
Query 261 TCTCCAATAATCTGACTGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCTC 320
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 259 TCTCCGATAATCTGACTGTCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCC 318
Query 321 TTGAAGCTTGCGTCATAAACA-CTTTGCC 348
|||||||||||| ||| || | ||| |||
Sbjct 319 TTGAAGCTTGCG-CATTAAGAACTTGGCC 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5