BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497116
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12850.1 | Symbols: | Far-red impaired responsive (FAR1) fa... 767 0.0
> AT4G12850.1 | Symbols: | Far-red impaired responsive (FAR1)
family protein | chr4:7536975-7538276 FORWARD LENGTH=645
Length=645
Score = 767 bits (415), Expect = 0.0
Identities = 508/552 (92%), Gaps = 9/552 (2%)
Strand=Plus/Plus
Query 1 ATGACCGGAGATCTGAAACTTCATGAACCTTACGTAGGTATGAAATTCGAGTCAGAAGAA 60
||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 94 ATGACCGGAGATCTGAAACTTGATGAACCTTACGTAGGTTTGAAATTCGAATCAGAAGAA 153
Query 61 GAAGCTAAAGAGTTCTATGTAGAATACTCCAAAATATTAGGGTTCGTTGTACGTATGATG 120
||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 154 GAAGCTAAAGATTTCTATGTAGAATACTCCAAAAGATTAGGGTTTGTTGTGCGTATGATG 213
Query 121 CAGAGACGACGATCAGGGATCGATGGAAGAACACTCGCGAGAAGATTAGGTTGTAACAAA 180
||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 214 CAGAGACGAAGATCAGGTATTGATGGAAGAACACTAGCGAGAAGATTAGGTTGTAACAAG 273
Query 181 CATGGCTTTTCTCGTACTGATCCACG---ATCTAG-T-T-GTTCTAGTTCACGTGAAGGT 234
|| |||||| || || | ||| ||| |||||| | | ||||||||||||| ||||||
Sbjct 274 CAAGGCTTTGGTCCTAATAATCAACGATCATCTAGTTCTAGTTCTAGTTCACGAGAAGGT 333
Query 235 TGCAAAGCTACGATTTTGGTGAAGATGGAGAAATCTGGGAAATGGGTTGTTACTAGATTC 294
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 334 TGCAAAGCTACGATTTTGGTGAAAATGGAGAAATCTGGGAAATGGGTTGTTACTAGATTC 393
Query 295 GTCAAAGAACACAATCACTCACTTCTATTCATTGGGTCTTCTTC-TA--ATTCCTTTGCT 351
||||||||||||||||||| |||| |||||||||||||||||| || |||| ||||||
Sbjct 394 ATCAAAGAACACAATCACTCTCTTCAATTCATTGGGTCTTCTTCTTATGATTCTTTTGCT 453
Query 352 GATAAGGATAGGAAGATTAAAGAGCTTGCAGAGGAGATCGAGTGTCAGGACCGATTATGC 411
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 454 GATAAGGAAAGGAAGATTAAAGAGCTTACGGAGGAGATCGAGTGTCAGGACCGATTATGC 513
Query 412 GATGCGTATCGGGATCGATTGGTGAGTTTTATCGATAATTTTGAACATTATACGGAAGAA 471
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 514 GATGTGTATCGGGATCGATTGGTGAGTTTTATCGATAATGTTGAACATTATACGGAAGAA 573
Query 472 TTGTCACTTAAAGTGAGGGATATTGTAGAGAATATTAAGAAACTTGAATGTCAAATACAA 531
|||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 574 TTGTCACTTAAAGTTCGAGATATTGTGGAGAATGTTAAGAAACTTGAATGTCAAATACAA 633
Query 532 ACAAGAGCTTGA 543
||||||||||||
Sbjct 634 ACAAGAGCTTGA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5