BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497121
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12790.1 | Symbols: | P-loop containing nucleoside triphosp... 1820 0.0
> AT4G12790.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:7517055-7519422
REVERSE LENGTH=1327
Length=1327
Score = 1820 bits (985), Expect = 0.0
Identities = 1134/1203 (94%), Gaps = 22/1203 (2%)
Strand=Plus/Plus
Query 32 TTTAGGTTTTGAGAGCAAAGAAAAACGAAGACGCGTCAAAGGTACTGAAATGTGTCTATT 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TTTAGGTTTTGAGAGCAAAGAAAAACGAAGACGCGTCAAAGGTACTGAAATGTGTCTATT 116
Query 92 GCTTCTTCTTGCTTCTGGTTTATGGGTTCCTGCGACATTTTGAGAGTGTTGTTTGGTTTA 151
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 G---CTTCTTGCTTCTGGTTTATGGGTCCCTGCGACATTTTGAGAGTGTTGTTTGGTTTA 173
Query 152 GGTGTTTGGTGCATTGCTTATATAACTGTTGCAATCTTTGCATCTTTTAGAATCTTTCAC 211
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 174 GGTGTCTGGTGTATTGCTTATATAACTGTTGCAATCTTTGCGTCTTTTAGAATCTTTCAC 233
Query 212 TCTATTTGTTAAAGTTCAAGAG-TTTGTGTGGAGAGG---T--TTGCTTGCTACAATGGG 265
| |||||||| || |||||||| ||| |||||||||| | |||||||||||||||||
Sbjct 234 TGTATTTGTT-AATTTCAAGAGCTTT-TGTGGAGAGGTTCTGCTTGCTTGCTACAATGGG 291
Query 266 TTACGCTCAGCTCGTTATCGGTCCAGCAGGCAGTGGAAAGTCAACTTATTGCTCGTCTTT 325
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTACGCCCAGCTAGTTATTGGTCCAGCAGGCAGTGGAAAGTCAACTTATTGCTCGTCTTT 351
Query 326 GTATGAACATTGCGAAACTATCGGTCGAACAATGCATGTTGTTAACCTTGATCCTGCTGC 385
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GTATGAACATTGTGAAACTATCGGTCGAACAATGCATGTTGTTAACCTTGATCCTGCTGC 411
Query 386 GGAGATCTTTAATTATCCTGTGGCTATGGATATCAGAGAACTTGTTTCTTTGGAAGATGT 445
||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 GGAGATCTTCAACTATCCTGTGGCTATGGATATCAGAGAACTTATTTCTTTGGAAGATGT 471
Query 446 TATGGAGGAGT-TAAAGCTTGGTCCTAATGGTGGCCTCATGTATTGCATGGAGTATCTTG 504
|||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 472 GATGGAGGA-TCTAAAGCTTGGTCCTAATGGTGCCCTTATGTATTGCATGGAGTATCTTG 530
Query 505 AGGATAGCTTACACGATTGGGTGGATGAAGAATTGGAGAACTACAGGGACGACGATTACC 564
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 531 AGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTACAGGGATGACGATTACC 590
Query 565 TTATATTTGATTGTCCAGGTCAGATAGAGCTGTTTACACATGTTCCTGTGCTCAAGAACT 624
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTATCTTTGATTGTCCAGGCCAGATAGAGCTGTTTACACATGTTCCTGTGCTCAAGAACT 650
Query 625 TTGTGGAGCATTTGAAACAGAAGAACTTCAACGTCTGTGTTGTGTATCTGCTTGATTCAC 684
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 651 TTGTGGAGCATTTGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCAC 710
Query 685 AGTTCATAACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCTGCAATGA 744
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGTTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCTGCAATGA 770
Query 745 TCCAGCTTGAATTACCACATGTCAACATCCTCTCAAAGATGGACCTCTTGCAGGACAAAA 804
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 771 TCCAGCTTGAATTACCACATGTCAACATCCTCTCAAAAATGGACCTCTTGCAGGACAAAA 830
Query 805 GCAACATTGATGACTACTTGAACCCGGAGCCTCGCACATTGTTGGCAGAGTTAAACCAAA 864
||||||||||||| |||||||| |||||||||||||||||| | |||||||||||| |||
Sbjct 831 GCAACATTGATGATTACTTGAATCCGGAGCCTCGCACATTGCTAGCAGAGTTAAACAAAA 890
Query 865 GAATGGGTCCTCAATATGCAAAACTGAACAAAGCCTTGATTGAGATGGTTGGAGAGTATG 924
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 891 GGATGGGTCCTCAATATGCAAAACTAAACAAAGCCTTGATTGAGATGGTGGGAGAGTATG 950
Query 925 GGATGGTGAATTTCATACCCATTAACTTGAGGAAAGAAAAGAGCATTCAATATGTTCTGT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GGATGGTGAATTTCATACCCATTAACTTGAGGAAAGAAAAGAGCATTCAATATGTTCTGT 1010
Query 985 CGCAAATCGACGTCTGTATTCAGTTTGGAGAAGACGCTGATGTGAAGATCAAAGATGACG 1044
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1011 CGCAAATCGACGTCTGTATTCAGTTTGGAGAAGATGCTGATGTGAACATCAAAGATGA-- 1068
Query 1045 ATGAAGATTTTGGTGACGATGGTCCTGGCCTATAAT-GTTATATTCGGTTTCTACGACTT 1103
||| |||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1069 -TGACGATTTTAGTGACGATGGTCCTGACCTATAATTGTTATATTCGGTTTCTACAACTT 1127
Query 1104 TTGTTATAACTCTAAACA-GTCTTGGTCTCATTGTTCTTGTTAGAGACCAATATGAGTTT 1162
|||||| || |||||||| | |||||||||||||||||||| || |||||| | ||||
Sbjct 1128 TTGTTAAAAGTCTAAACAAG-CTTGGTCTCATTGTTCTTGTCAGTTACCAATG-GCGTTT 1185
Query 1163 GTGAGAACTTTTGTTGAATATCAAAAGCCTTTAATGTGAGACGCATTCAAACT-AGGTTG 1221
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||
Sbjct 1186 GTGAGAACTTTTGTTGAATATCAAAAGCCTTCAATGTGAGACGCACTCAAACTTAG-TTG 1244
Query 1222 AAA 1224
|||
Sbjct 1245 AAA 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5