BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497127
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12760.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1112 0.0
> AT4G12760.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7504852-7506255
FORWARD LENGTH=965
Length=965
Score = 1112 bits (602), Expect = 0.0
Identities = 767/843 (91%), Gaps = 26/843 (3%)
Strand=Plus/Plus
Query 6 GGAGGAATTGGCAAAACCAGCTTCGTCAATTCCGAAGCGGACCTCAAAGAAATCCCAGCC 65
|||| ||||||||||| |||||||| |||||||||| ||||||||||| |||||||| ||
Sbjct 27 GGAGAAATTGGCAAAAACAGCTTCGACAATTCCGAAACGGACCTCAAATAAATCCCAACC 86
Query 66 CGAATTCGATTACTCTACAAGGAAACAAAAGTTCAGAGAAAATTGCTTCAGAAGAGTTAG 125
||| || |||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 87 CGATTTTGATTACTCTATAAGGAAGCAAAAGTTCAGAGAGAATTGCTTCAGAAGAGTTAG 146
Query 126 AGAAGATAGGACTCGTTTACTGTGGAAATTGAGGCTCTCTGATTGTCAATCTTCAGATCA 185
||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 147 AGAAGATAGGACTCGTTTACTATGGAAATTAAGGATCTCTGATTGTCAATCTTCAGATCA 206
Query 186 AAAGGAGATTATCAATTCTGCTTTCCAGGATATTGTTTCTGATGAACTGAAAAAGATTGA 245
|||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 207 AAAGGAGATTATAAATTGTGCTTTCCAAGATATTGTTTCTGATGAATTGAAAAAGATTGA 266
Query 246 GGATTCGTCGAGAAACCTCTC---G-A-CAG----TGACTGAAGATTGTGATGATATATT 296
|||||||||||||||||| || | | || |||||||||||||||||||||||||
Sbjct 267 GGATTCGTCGAGAAACCTTTCGGGGAATAAGACTCTGACTGAAGATTGTGATGATATATT 326
Query 297 ATGGGAATATGAGGAGGGTCTTAAAGGTGTTTATGAAGGTGATAGTGAAGATATATTGTT 356
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 327 ATGGGAATATGAGGAAGGTCTTAAAGGTGTTTATGAAGGTGATAGTGAAGAGATATTGTT 386
Query 357 AGAAATGCAACAGATATTCTACAAGGATTTGTTAT--TAGAC-AAC-------G---A-- 401
||||||||||||||||||||| ||||||||||||| |||| ||| | |
Sbjct 387 AGAAATGCAACAGATATTCTATAAGGATTTGTTATCAGAGACTAACGTAAATGGATCATT 446
Query 402 TGTTCAGATCGAAACATGGGAAGACGAGCAAGATGGTTACTTGGCCGCCTTAGTTTCTCA 461
||||||| | |||||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 447 TGTTCAGGTTGAAACATGGGAAGACGAGGAAGATGATTACTTGGCCGCTTTAGTTTCTCA 506
Query 462 GAATATGTGTTTAAACAGTGAACAGGAGCAAAACCAGATATGGTGTCCGTTATGCAAGAA 521
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 507 GAATATGTGTTTAAACAGTGAACAGGAGGAAAGCCAGATATGGTGTCCGATATGCAAGAA 566
Query 522 AGGAGAGCTTATGGAGAATAACCGACACATCTATTGCAACATGTGTGAAATGCAGCTTAA 581
||||||||||||||||||| || |||| ||| |||||||||||||||| |||||||||||
Sbjct 567 AGGAGAGCTTATGGAGAATCACAGACATATCGATTGCAACATGTGTGATATGCAGCTTAA 626
Query 582 TAAAGGCGAAGAGGTTAATCTGAATATTTTGCAAGAAAGGTTAGCAGAAGCGCACGCTGA 641
||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||
Sbjct 627 TAAAGGCGAAGAGGTTAATTTGAACATTCTGCAAGAAAGGTTAGCAGAAGCGCACGGTGA 686
Query 642 ACATCTCGAGAGAGGATGCAGATTAAAACCCAAATTCAGTGTTCAGAGTGTGTATAATTT 701
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 687 ACATCTCCAGAGAGGATGCAGATTAAAACCCGAATTCAGTGTTCAGAGTGTGTATAATTT 746
Query 702 GAAGGCGTTGTACATAACATGCGAGGCTTGTAATACGTTTGAGGTTGTTGTATAAAGCTC 761
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 747 GAAGGCTTTGTACATAACATGTGAGGCTTGTAAAACGTTTGAGGTTGTTGTATAAAGCTC 806
Query 762 TTAACTTAAAGAAGGATACACATCATTTATCCTCTAT-CTCACTCGAGATCATTATAGGT 820
|||||||||||||||||||||||||||| || | ||| | |||||||||||||| |||||
Sbjct 807 TTAACTTAAAGAAGGATACACATCATTTCTCATGTATAC-CACTCGAGATCATTGTAGGT 865
Query 821 TAG 823
|||
Sbjct 866 TAG 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5