BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497144

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   496    7e-140
  AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like su...   171    5e-42 
  AT3G44130.1 | Symbols:  | F-box and associated interaction doma...   161    3e-39 


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  496 bits (268),  Expect = 7e-140
 Identities = 297/311 (95%), Gaps = 2/311 (1%)
 Strand=Plus/Plus

Query  1    CTGCACAATACGGACCTAAAGCAGGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTGTT  60
            |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct  86   CTGCGCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTG-T  144

Query  61   TTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  TTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTT  204

Query  121  TCAGAAGGAAGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTG  180
            |||||| || ||||||||||| ||||||||||||||||||  ||||||||||||||||||
Sbjct  205  TCAGAAAGAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTG  264

Query  181  AAAAGGACGATACAGAGTATTTGTGTTTTGACAGTTGTTCTAAATACCACCACCTCAGTG  240
            ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  265  AAAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTG  324

Query  241  ATAATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGCACCT-GGT  299
            || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  325  ATTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGT  384

Query  300  AAACATTTACT  310
            |||||||||||
Sbjct  385  AAACATTTACT  395


> AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like 
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062

 Score =  171 bits (92),  Expect = 5e-42
 Identities = 115/126 (91%), Gaps = 1/126 (1%)
 Strand=Plus/Plus

Query  145  TTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGGACGATACAGAGTATTTGT  204
            ||| |||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||
Sbjct  340  TTG-GAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGT  398

Query  205  GTTTTGACAGTTGTTCTAAATACCACCACCTCAGTGATAATTCAGGTTGTACATGATGGT  264
            |||||||| |||  || ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  399  GTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGAT  458

Query  265  GGTTCT  270
            ||||||
Sbjct  459  GGTTCT  464


 Score =  132 bits (71),  Expect = 2e-30
 Identities = 82/87 (94%), Gaps = 2/87 (2%)
 Strand=Plus/Plus

Query  12   GGACCTAAAGCAGGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATA  71
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  258  GGACCTAAAGCAGGAACGAAAAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATA  317

Query  72   TGGAAGCCTTAAA-CCGGATAGATTGG  97
            ||||||||| ||| ||||  |||||||
Sbjct  318  TGGAAGCCT-AAATCCGGGCAGATTGG  343


> AT3G44130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 94/97 (97%), Gaps = 1/97 (1%)
 Strand=Plus/Plus

Query  1    CTGCACAATACGGACCTAAAGCAGGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTGTT  60
            ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct  815  CTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAATGCTGAGAAGGCTTG-T  873

Query  61   TTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  97
            |||||||||||||||||||||||||||||||||||||
Sbjct  874  TTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  910



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5