BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497146
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12650.1 | Symbols: | Endomembrane protein 70 protein famil... 3031 0.0
> AT4G12650.1 | Symbols: | Endomembrane protein 70 protein family
| chr4:7467978-7470551 REVERSE LENGTH=2260
Length=2260
Score = 3031 bits (1641), Expect = 0.0
Identities = 1759/1816 (97%), Gaps = 8/1816 (0%)
Strand=Plus/Plus
Query 1 ATGATTCTTGATAACTTGCCTGCTTTGAGATTCGCTAAGCAAAATGGGGTTACTATCCAG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 448 ATGATTCTTGATAACTTGCCTGCTTTGAGATTCGCTAAGCAGAATGGGGTTACTATCCAG 507
Query 61 TGGACTGGATATCCTGTTGGGTATTCGCCACCAAACAGCAATGATGATTACATCATTAAT 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 508 TGGACTGGATATCCTGTTGGGTATTCGCCACCTAACAGTAATGATGATTACATCATTAAT 567
Query 121 CACCTCAAGTTTAAGGTCTTGGTTCATGAATATGAAGGCAATGTCATGGAGGTGATTGGT 180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 568 CACCTCAAGTTTAAGGTTTTGGTTCATGAGTATGAAGGCAATGTCATGGAGGTGATTGGT 627
Query 181 ACCGGTGAAGAAGGTATGGGTGTGATCTCTGAAGCTGATAAAAAGAAGGCACTGGGCTAT 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 628 ACTGGTGAAGAAGGTATGGGTGTGATCTCTGAAGCTGATAAGAAGAAGGCATTGGGGTAT 687
Query 241 GAGATTGTTGGATTTGAGGTTGTTCCCTGCAGTGTTAAGTATGATCCTGCAAAAATGACG 300
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 688 GAGATTGTTGGATTTGAGGTTGTTCCCTGCAGTGTTAAGTATGATGCTGAAAAAATGACG 747
Query 301 AAACTTCACATGTATGACCCTGTTCCTTCAGTTAACTGTCCGTTGGAGCTTGACAAAGCT 360
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 748 AAGCTTCACATGTATGACCCTGTTCCTTCAGTTAACTGTCCATTGGAGCTTGACAAAGCT 807
Query 361 CAGATCATTAAAGAACATGAAAGAATAACCTTCACTTATGAAGTTGAATTTGTTAAGAGT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 808 CAGATCATTAAAGAACATGAAAGAATAACCTTCACTTATGAAGTGGAATTTGTTAAGAGT 867
Query 421 GAGACAAGATGGCCATCCAGATGGGATGCCTATTTGAAAATGGAAGGTGCTCGTGTTCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GAGACAAGATGGCCATCCAGATGGGATGCCTATTTGAAAATGGAAGGTGCTCGTGTTCAT 927
Query 481 TGGTTCTCTATTTTGAACTCTCTTATGGTGATCTTCTTTCTCGCCGGTATAGTTTTCGTC 540
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 928 TGGTTCTCTATTTTGAACTCGCTTATGGTGATCTTCTTTCTGGCCGGTATAGTTTTCGTC 987
Query 541 ATATTCCTAAGGACAGTGAGAAGGGATTTGACAAAGTATGAGGAACTGGACAAGGAAGCA 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ATATTCCTGAGGACAGTGAGAAGGGATTTGACAAAGTATGAGGAACTGGACAAGGAAGCA 1047
Query 601 CAGGCACAGATGAATGAAGAGCTCTCTGGATGGAAACTTGTTGTCGGAGATGTGTTCAGA 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CAGGCACAGATGAATGAGGAGCTCTCTGGATGGAAACTTGTTGTCGGAGATGTGTTCAGA 1107
Query 661 GAACCAGAAATGTCAAAGCTTCTATGCATTATGGTGGGAGACGGGGTTCGGATTACAGGA 720
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1108 GAACCAGAAATGTCAAAGCTTCTATGCATTATGGTGGGAGATGGGGTTCGAATTACAGGA 1167
Query 721 ATGGCTGTTGTCACGATTGTTTTCGCAGCACTTGGATTCATGTCACCTGCTTCAAGAGGA 780
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1168 ATGGCTGTTGTCACTATTGTTTTCGCTGCACTTGGATTCATGTCGCCTGCCTCAAGAGGA 1227
Query 781 ATGCTACTAACCGGGATGATTATTCTCTATCTTTTCTTGGGTATTGCTGCTGGGTACGCT 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1228 ATGCTACTAACCGGGATGATTATTCTCTATCTTTTCTTGGGTATTGTTGCTGGGTACGCT 1287
Query 841 GGTGTTCGGCTCTGGAGAACCGTCAAGGGAACTTCAGAAGGATGGAGATCGCTTTCCTGG 900
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1288 GGTGTTCGGCTCTGGAGAACTGTCAAGGGGACTTCAGAAGGATGGAGATCACTTTCCTGG 1347
Query 901 TCCATAGCATGCTTCTTCCCGGGTATTGCTTTTGTTATACTAACAGTGTTGAACTTCCTT 960
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1348 TCCATTGCATGCTTCTTCCCGGGTATTGCTTTTGTTATACTCACAGTGTTGAACTTCCTT 1407
Query 961 CTCTGGAGCAGCAACAGTACTGGAGCCATCCCAATCTCATTGTACTTTGAGCTCCTGGCT 1020
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 1408 CTCTGGAGCAGCAACAGCACTGGAGCCATCCCAATCTCTTTGTATTTTGAGCTCTTGGCT 1467
Query 1021 CTCTGGTTCTGCATCTCGGTTCCTCTCACCCTGTTTGGAGGATTCCTAGGCACACGAGCA 1080
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1468 CTCTGGTTCTGCATCTCGGTTCCTCTCACCCTATTTGGAGGATTCCTAGGAACACGAGCA 1527
Query 1081 GAAGCAATCCAGTTTCCAGTGAGAACCAACCAGATTCCAAGGGAAATACCAGAACGGAAA 1140
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1528 GAAGCAATCCAGTTCCCAGTGAGAACCAACCAGATTCCAAGGGAAATCCCAGAACGGAAA 1587
Query 1141 TACCCGTCATGGCTTCTAGTCCTTGGAGCAGGAACCCTTCCTTTTGGAACGCTGTTCATA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1588 TACCCGTCATGGCTTCTAGTCCTTGGAGCAGGAACCCTTCCTTTTGGAACGCTCTTCATA 1647
Query 1201 GAACTGTTCTTCATCTTCTCCAGCATATGGTTAGGGAGATTCTACTACGTATTTGGGTTC 1260
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1648 GAACTGTTCTTCATCTTCTCCAGCATATGGTTAGGGAGATTCTACTATGTATTTGGGTTC 1707
Query 1261 TTACTCATAGTTCTGCTTCTTTTGGTAGTCGTGTGTGCAGAAGTATCAGTGGTCTTGACC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 TTACTCATAGTTCTGCTTCTTTTGGTAGTCGTGTGTGCAGAAGTATCAGTGGTCTTGACC 1767
Query 1321 TATATGCATCTCTGCGTTGAAGATTGGAGGTGGTGGTGGAAAGCCTTCTATGCATCTGGT 1380
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1768 TACATGCACCTCTGCGTTGAAGACTGGAGGTGGTGGTGGAAAGCCTTCTATGCATCTGGT 1827
Query 1381 TCAGTCGCATTGTACGTTTTCGCTTACTCCATCAACTACTTGGTCTTTGATCTACAAAGT 1440
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1828 TCAGTCGCATTGTACGTTTTCGCTTACTCCATCAACTATTTGGTCTTTGATCTACAAAGT 1887
Query 1441 CTGAGTGGACCCGTCTCAGCTATGCTTTACATTGGCTACTCTCTGCTTATGGCAATTGCT 1500
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 CTGAGCGGACCCGTCTCAGCTATGCTTTACATTGGCTACTCTCTGCTTATGGCAATTGCA 1947
Query 1501 ATCATGCTCGCCACTGGAACCATTGGCTTCCTCACCTCCTTTTACTTCGTCCACTATCTC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 ATCATGCTCGCCACTGGAACCATTGGCTTCCTCACCTCCTTTTACTTCGTCCACTATCTC 2007
Query 1561 TTTTCCTCTGTCAAAATCGATTGATACCTTGACGACAAAATCTCAACCGTTGATCTCTGC 1620
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2008 TTTTCCTCTGTCAAAATCGATTGATACCTTGACGACAAAATCTCAGCCGTTGATCTCTGC 2067
Query 1621 TTT-TCAAAAGCAATTTCAGGTGTTGTTAtttttttGTCAGTACTAGACTTGTAGAGTCT 1679
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 TTTCTCTAAAGCAATTTCAGGTGTTGTTATTTTTTTGTCAGTACTAGACTTGTAGAGTC- 2126
Query 1680 CACTATATTTTACATGtttttattttttC-TCGGACCTATATTCTCCTTATATGtttttt 1738
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2127 CACTATATTTTACATGTTTTTATTTTTTCCT-GGACCTATATTCTCCTTATATGTTTTTT 2185
Query 1739 t-CTTACATCTCCGCCTTC-T-ATGTTTTTGTTTTGAACTTTTGAGTAGAAAATAAACAA 1795
| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 2186 TTCTTACATCTCCGCCT-CATTATGTTTTTGTTTTGAACTTTTGAGTAGAAAATAAACAA 2244
Query 1796 ATTTGCCTTTCAGCTT 1811
||||||||||| ||||
Sbjct 2245 ATTTGCCTTTCTGCTT 2260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89607972825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5