BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497148
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12690.1 | Symbols: | Plant protein of unknown function (DU... 1465 0.0
> AT4G12690.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr4:7480641-7482150 FORWARD LENGTH=1409
Length=1409
Score = 1465 bits (793), Expect = 0.0
Identities = 976/1059 (92%), Gaps = 33/1059 (3%)
Strand=Plus/Plus
Query 1 GACTCAGGGATCAACAAAACCCAG-tttt---ttt-tttC-----TTGTCAAATTACTCT 50
||||||| ||||||||||||| || |||| ||| |||| || ||||||||||||
Sbjct 66 GACTCAGAGATCAACAAAACCTAGTTTTTGAATTTGTTTCAATTTTTCTCAAATTACTCT 125
Query 51 G-TTTTGAGATCTCTGTTTTAACCGGCTTTGTAGAATTATGTCTTTGAGATCAGAATCTT 109
| |||||||||||||||||| | | | || ||||||||||||||| ||||||||||
Sbjct 126 GTTTTTGAGATCTCTGTTTT---C-G---T-TA-AATTATGTCTTTGAGGTCAGAATCTT 176
Query 110 CAACGGCAGAGAAGATAACAGAGGATCCGCTGACGTATAAGACGGCTCAAAGCAGCGTGA 169
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 177 CAACGGCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGA 236
Query 170 CGTGCATCTACCAAGCACACATGGTTGGTTTCTGGAGAAACGTTAGGGTTCTTTGGTCTA 229
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 237 CGTGCATCTACCAAGCACATATGGTTGGATTCTGGAGAAACGTTAGGGTTCTATGGTCTA 296
Query 230 AAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATT 356
Query 290 ACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGAATAAGAAAGGATACAAATCGT 349
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 357 ACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGT 416
Query 350 TTGAGGTCGAAGGAAACCAAGTAGATGTGTATTGGGATTTTAGGTCTGCTAAATTCAATG 409
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 417 TTGAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACG 476
Query 410 GCGGGCCTGAGCCGAGCTCGGACTTTTACGTGGCGCTTGTATCGGAGGAGGAGGTTGTTT 469
||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 477 GCGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTTGTATCCGAGGAAGAGGTTGTTT 536
Query 470 TGTTGTTAGGTGATCACAAGAAGAAAGCTTTTAAGAGAACTAAATCTAGACCTTCTTTGG 529
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 537 TGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAATCTAGACCTTCCTTGG 596
Query 530 TTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGAGTTTTTCGACTA 589
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 TTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGATTTTTTCGACTA 656
Query 590 GGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCGACGGGGG 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 657 GGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTACCGGGG 716
Query 650 CGAAGGATCCAGAGATGTGGATTAGCGTGGATGGGATAGTTTTGGTTCAGGTGAGAAATC 709
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 717 CGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGTGAGAAATC 776
Query 710 TGCAGTGGAAATTCAGAGGGAATCAGACGGTTTTGGTTGATAAAGAACCTGTTCAAGTGT 769
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 777 TGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTCAAGTGT 836
Query 770 TTTGGGATGTGTATGATTGGTTGTTCAGCTCACCCGGTACAGGTCACGGCTTGTTCATCT 829
||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||
Sbjct 837 TTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGTTCATCT 896
Query 830 TTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAATGGAACCAAAGA-TAGTAGTG-TT-T 886
|||||||||||||||||||||||||||||||||| | |||||| || | | |||| || |
Sbjct 897 TTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAACGAAACCAA-GAATTGCAGTGCTTCT 955
Query 887 -CTTCTTCGTCT--G----ATTTTTGTCTATTCCTTTATGCTTGGAAATTGGAGTAAGTC 939
||||||| ||| | | |||||||| || |||||||||||||||||||||||||||
Sbjct 956 TCTTCTTCTTCTTCGTCGGAGTTTTGTCTCTTTCTTTATGCTTGGAAATTGGAGTAAGTC 1015
Query 940 TAAATGTTTTCATTCCAAAAGCTTGCATTC-TTTTTTGGCCTGACTGTAAATTCACATTC 998
|||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1016 TAAATGTTTTCAATCCAAAAGCTTGCATTGATTTTTTTGCCTGACTGTAAATTCACATTC 1075
Query 999 AACA-TCAATCTTAGTGTGTGACCGACTCTTGATAATTT 1036
|| | |||||||||| |||||||||||||||||||||||
Sbjct 1076 AAAAATCAATCTTAGCGTGTGACCGACTCTTGATAATTT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5