BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497150
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12710.1 | Symbols: | ARM repeat superfamily protein | chr4... 2130 0.0
> AT4G12710.1 | Symbols: | ARM repeat superfamily protein | chr4:7484837-7486801
REVERSE LENGTH=1480
Length=1480
Score = 2130 bits (1153), Expect = 0.0
Identities = 1380/1484 (93%), Gaps = 38/1484 (3%)
Strand=Plus/Plus
Query 1 GTCGTTTCGTCTTTGACT--AGATAAACACAaga-gagagcgag-gagagagcgagcgag 56
|||||||||||||||||| ||| ||||| || | |||||||| || ||||||| |||
Sbjct 1 GTCGTTTCGTCTTTGACTAGAGAGAAACA-AACACAAGAGCGAGCAAGCGAGCGAGAGAG 59
Query 57 --agagaTAATGGTGGTGGAAGAGAATCAGAATCAGATGATGGATTCCATCGCCGGCGAC 114
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 60 ACAGAGATAATGGTGGTGGAAGAGAACCAGAATCAGATGATGGCTTCCATCGCCGGCGAC 119
Query 115 TCAGCGATAACTGCAAATGTATC-G--GAAGACGAAGCAGAGGAGGAAACCACCACCAAC 171
||| || | || |||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 120 TCAACGGTGACGGCAAATATATCGGAAGAAGACGAAGCAGAGGAGGAAACCACCACCAAC 179
Query 172 ACATGGAAAAACACAAAGGAATTACTGATTCTACATCTCTCCAAGAAGCTTCTCCATGGA 231
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACATGGAAAACCACAAAGGAATTACTGATTCTACATCTCTCCAAGAAGCTTCTCCATGGA 239
Query 232 GATCTCGATTTCCGAATTGAAGCCGCCAAGGAAATCCGGAAGCTGCTTAGAAAGTCTCCG 291
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 240 GATCTCGATTTCCGAATTGAAGCCGCTAAGGAAATCCGAAAGCTGCTTAGAAAGTCTCCG 299
Query 292 GTTAAGTCTTCGGCTAGGTCAAAGCTCGCCGACGCCGGAGTTATCCCGCCGCTTGTTCCC 351
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 300 GTTAAGTCTTCCGCTAGGTCAAAACTCGCCGACGCCGGCGTTATCCCGCCGCTTGTTCCC 359
Query 352 ATGCTCATT-TCCTCTAACGTTGATGCTCGTCACGCCTCTCTCCTCGCTCTCCTTAACCT 410
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGCTC-TTCTCCTCTAACGTTGATGCTCGTCACGCCTCTCTCCTCGCTCTCCTTAACCT 418
Query 411 CGCCGTTAGAAATGAACGGAATAAGATTGAAATTGTGAAAGCTGGTGCCGTTCCACCTCT 470
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 419 CGCCGTTAGAAATGAACGGAATAAGATTGAGATTGTGAAAGCCGGTGCCGTTCCACCTCT 478
Query 471 CATACAGATTCTGAAGCTCCACAATGCTAGTTTGCGTGAATTGGCCACTGCAGCAATTCT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CATACAGATTCTGAAGCTCCACAATGCTAGTTTGCGTGAATTGGCCACTGCAGCAATTCT 538
Query 531 AACACTCTCAGCTGCACCAGCTAATAAGGCGACGATCATAACTTCTGGAGTTCCACCGCT 590
|||||| |||||||||||||| || ||||||| ||| |||| ||||||||||||||||||
Sbjct 539 AACACTTTCAGCTGCACCAGCCAACAAGGCGATGATTATAAGTTCTGGAGTTCCACCGCT 598
Query 591 TCTGGTTCAGATGCTTAGCTCCGGAACTGTACAAGGGAAAGTAGATGCTGTCACAGCTCT 650
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 TCTGATTCAGATGCTTAGCTCCGGAACTGTACAAGGGAAAGTAGATGCTGTCACAGCCCT 658
Query 651 TCACAATCTATCCGCTTGCAAAGAGTACTCCGCTTCAATT-TTAGATGCTAAAGCCGTCT 709
||| ||| |||| ||||||||||||||||| ||| ||||| || ||||||||||| ||||
Sbjct 659 TCATAATTTATCAGCTTGCAAAGAGTACTCTGCTCCAATTCTT-GATGCTAAAGCTGTCT 717
Query 710 CCCCGCTCATCCACCTCCTAAAAGAATGCAAAAAGCATTCCAAGTTTGCTGAAAAAGCCA 769
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 718 ACCCGCTCATCCACCTCCTTAAAGAATGCAAAAAACATTCCAAGTTTGCTGAAAAAGCCA 777
Query 770 CAGCCTTGGTTGAGATGATCCTTTCTCACTCTGAGGACGGGCGAAACGCCATCACCAGCT 829
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 778 CAGCCTTGGTTGAGATGATCCTGTCTCACTCTGAGGACGGGCGAAATGCCATCACCAGCT 837
Query 830 GCGAAGATGGTATTCTGACTTTAGTAGAGACTGTAGAGGATGGTTCTCCACTTAGCATAG 889
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 GTGAAGATGGTATTCTGACTTTAGTAGAGACTGTAGAGGATGGTTCTCCACTCAGCATAG 897
Query 890 AACACGCGGTTGGAGCTTTGCTTTCTCTATGCCGCAGCGACCGCGATAAGTACCGGAAAC 949
||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 898 AACACGCAGTTGGAGCTCTGCTTTCTCTATGCCGCAGCGACCGAGATAAGTACCGAAAAC 957
Query 950 TCATACTAAAAGAAGGTGCAATCCCGGGTCTCCTAAGTTCAACCGTAGAAGGAACATCAA 1009
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 958 TCATACTGAAAGAAGGTGCAATCCCGGGTCTCCTAAGTTCAACAGTAGATGGAACATCAA 1017
Query 1010 AGTCCCGAGATAGAGCCAGAGTTCTCTTGGACCTACTGAGAGAAACCTCTCGTGAGAAAG 1069
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 AGTCCCGAGATAGAGCCAGAGTTCTCTTGGACCTACTGAGAGAAACCCCTCGTGAGAAAG 1077
Query 1070 AAATGGCTCCATTAATACTCGAGAAAATTGTCTATGGCATTGCAGTACAAGTCGACGGGG 1129
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAATGACTCCATTAACACTAGAGAAAATTGTCTATGGCATTGCAGTACAAGTCGACGGGG 1137
Query 1130 CAGAAAAAGCTGCTGAAACGGCTAAGAAACTGTTGCAGGACATGGTTCATAGAAGCATGG 1189
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 CAGAAAAAGCTGCTGAAACGGCTAAGAAACTGCTGCAGGACATGGTTCATAGAAGCATGG 1197
Query 1190 AGCTGAGCATGAAAAGCATCCAGCACAAGGCT-----------A---AT-----AT--CT 1228
|||||||||||||||||||||||||||||||| | || || ||
Sbjct 1198 AGCTGAGCATGAAAAGCATCCAGCACAAGGCTGCGTCTTGTGCATCTATTCCTGATATCT 1257
Query 1229 CTTCCAAATCGAATATCTAACGATCATAGTGGTAATATTATTGATACCTTAGAAGTAAAG 1288
||||||||||||||| ||||||||| |||||||||||||||||||| | |||||| || |
Sbjct 1258 CTTCCAAATCGAATAGCTAACGATCGTAGTGGTAATATTATTGATATCGTAGAAGCAA-G 1316
Query 1289 AAGGTTGCATTATGAGATTTGTAGGtttttttG-TTCTGATCTGGAAAAATTCAAGAATC 1347
|||||||||||| ||||||||||| | ||| | |||||||||||||||||||||||||
Sbjct 1317 AAGGTTGCATTACGAGATTTGTAG-TGTTTCAGGTTCTGATCTGGAAAAATTCAAGAATT 1375
Query 1348 AGAGCCGGGTTTAGGTCTAGTCTTACCTCTCCGGAGTTGGAAGAAAAACCATTTGGTAAG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1376 AGAGCCGGGTTTAGGTCTAGTCTTACCTCTCCGGAGTTGGAAGAAAAACCATTTGCTAAG 1435
Query 1408 TTTTTAAGGCTGAATTTTTCTTTCCCTTTTGTACATACTTTTGG 1451
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTTTGAAGGCTGAATTTTTCTTTCCCTTTTGTACATACTTTTGG 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5