BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497157
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69930.1 | Symbols: ATGSTU11, GSTU11 | glutathione S-transfe... 1295 0.0
> AT1G69930.1 | Symbols: ATGSTU11, GSTU11 | glutathione S-transferase
TAU 11 | chr1:26337497-26338795 REVERSE LENGTH=1048
Length=1048
Score = 1295 bits (701), Expect = 0.0
Identities = 811/864 (94%), Gaps = 8/864 (1%)
Strand=Plus/Plus
Query 1 ATCAAACCACAGCTGTTCAATTCCTATCCCACa-aaaaaaaaaacacacacgcacacaca 59
||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |
Sbjct 1 ATCAAACCACAGCTGTTCAATTCCTATCCCACACAAAAAAAAAAAAAACACGCACACAAA 60
Query 60 AACAAGAGCTGTGAGTTTGATCAATCTCGTCAAAAGGTGTAACACATGGGTCTAATGAAT 119
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 61 AACAAGAGCTGTGAGTTTGATCAATCTCTTCAAAAAGTGTAACACATGGGTCTAATGAAT 120
Query 120 -GGTTCAAAGAATGATGAGTACGTAAAGCTGTTAGGAGCATGGCCTAGCCCTTTTGTGCT 178
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CGG-TCAAAGAATGATGAGTACGTAAAGCTACTAGGAGCATGGCCTAGCCCTTTTGTGCT 179
Query 179 GAGGACTCGGATCGCACTTAACCTAAAGAACGTAGCGTACGAGTATCTAGAAGAACAAGA 238
||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 180 GAGAACTCGGATCGCACTTAACCTAAAGAACGTAGCATACGAGTATCTAGAAGAAGAAGA 239
Query 239 TACATTGAATTCGGAGAGCGTTTTAAACTATAACCCCGTCCATAAACAGATCCCTATCCT 298
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACTTTGAGTTCGGAGAGCGTTTTAAACTATAACCCCGTCCATAAACAGATCCCTATCCT 299
Query 299 CATCCATGGCAACAAACCAATCCGTGAATCCCTCAACATCGTCATGTATGTTGATGAGAC 358
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CATTCATGGCAACAAACCAATCCGTGAATCTCTCAACATCGTCATGTATGTTGATGAGAC 359
Query 359 TTGGTTCTCCGGTCCTCCCATCCTTCCCTCTGATCCATTTGATCGCGCTGTGGCTCGCTT 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TTGGCTCTCCGGTCCTCCCATCCTTCCCTCTGATCCATTTGATCGCGCTGTGGCTCGATT 419
Query 419 TTGGGACGTCTATATCGATGAACACTGTTTCACATCAATTAATGGAGTGGCAGTAGCAAA 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TTGGGACGTCTATATCGATGAACACTGTTTCACATCAATCAATGGAGTGGCAGTAGCAAA 479
Query 479 AAACGAGGAGGAGAGAAAGGCGGCGATAACTAAGCTAGAGCAGTGTATGGCTCTATTGGA 538
| |||||| | | ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 AGGTGAGGAGAACATAAATGCGGCGATAGCTAAGCTAGAGCAGTGTATGGCTCTATTGGA 539
Query 539 AGAAACGTTTCAAGAATGCAGCAAAGGCAGAGGCTTCTTTGGAGGAGAAAATATTGGATT 598
||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 540 AGAAACGTTTCAAGAATGCAGCAAAGGAAGAGGCTTCTTTGGAGGAGAAAACATCGGGTT 599
Query 599 CATTGACATTGGTTTCGGCTCGATGTTGGGTCCTCTTAAGGTTCTCGAGAAATTTACCGG 658
||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 600 CATCGACATTGGTTTCGGCTCGATGTTGGGTCCTCTTACGGTTCTTGAGAAATTTACCGG 659
Query 659 CGTCAAGTTCATACATCCCGAAAACACACCAGGTCTATTCCTTTGGGCAGACAGATTCTA 718
|||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||
Sbjct 660 CGTCAAGTTCATACATCCTGAAAACACACCAGGTCTTTTCCATTGGGCTGACAGATTCTA 719
Query 719 CGCACATGAAGCAGTCAAGCCTGTCATGCCAGATATCGAAAAACTGGTCGAGTTCGCTAA 778
||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 720 CGCCCATGAAGCGGTCAAGCCTGTCATGCCCGATATCGAAAAACTGGTCCAGTTCGCTAG 779
Query 779 GCTCAAGTTCAATACTTCAATTTTTAAATAAAAAGCCAAG-ATTT-TAAAATATATATAC 836
||||||||||||||||||||| ||||||| |||| ||||| | || |||| |||||||||
Sbjct 780 GCTCAAGTTCAATACTTCAATCTTTAAATGAAAA-CCAAGGACTTATAAA-TATATATAC 837
Query 837 GACGAC-AAATGAACATAATCGAG 859
|||||| |||| ||||||||||||
Sbjct 838 GACGACTAAATTAACATAATCGAG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42950195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5