BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497160
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69910.1 | Symbols: | Protein kinase superfamily protein | ... 3330 0.0
> AT1G69910.1 | Symbols: | Protein kinase superfamily protein
| chr1:26330114-26332266 FORWARD LENGTH=2153
Length=2153
Score = 3330 bits (1803), Expect = 0.0
Identities = 2045/2159 (95%), Gaps = 28/2159 (1%)
Strand=Plus/Plus
Query 1 AAAA-TTCAGTCAACAGATTTAGAATCAGATCTCTTCCTTTCTCCTTTACATGTCTCAAC 59
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 AAAAGTTCAGTCAACAGATTTAGAATCAGATCTCTTCCTTTCTCTTTTACATGTCTCAAC 62
Query 60 CACCGTGGAGATGCTTCTCTCTACTCTTCTTTGTTCTCACCA---TT-GT--TAAACCTT 113
||||||||||||| |||||||||||| ||||||||||||||| || || ||||||||
Sbjct 63 CACCGTGGAGATGTTTCTCTCTACTCATCTTTGTTCTCACCATTTTTAGTACTAAACCTT 122
Query 114 CCTCTGCATCTACTTCATGTTCTTCTTCATTTCATTGCCCACCGTTTAACTCCTCACCAC 173
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 123 CCTCTGCATCTACTTCATGTTCTTCTTCATTTCATTGCCCACCGTTCAACTCCTCACCAC 182
Query 174 CGTACCCATTCTCATCTTCTCCGGGATGTGGCCACCCAAACTTCCAGATCCAATGCTCAT 233
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGTACCCTTTCTCAGCTTCTCCGGGATGTGGCCACCCAAACTTCCAGATCCAATGCTCAT 242
Query 234 CTTCACGCGCCACCATCACAATCAAAAAcctcactttctctatcctccattactcatctc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTTCACGCGCCACCATCACAATCAAAAACCTCACTTTCTCTATCCTCCATTACTCATCAA 302
Query 294 tctcctcttctctaaccctctctccCATTACAAACTCTACCCGGACCAAC-AACAACTGT 352
||||||||||||||||||||||||||||||||||| ||| ||||| | || |||||||||
Sbjct 303 TCTCCTCTTCTCTAACCCTCTCTCCCATTACAAACACTAACCGGAAC-ACAAACAACTGT 361
Query 353 TCTTCTGC-CCGGTTCTCCTCCTCACCAAACCGGTTCATCGACTTAACCGGTTCATCTTT 411
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 TCTTCT-CTCCGGTTCTCCTCCTCACCAAACCGGTTCATCGACTTAACCGGTTCACCTTT 420
Query 412 CAGAGtctctgactcttcttgctctcgtctctctcttctccgtccttgctctcctttaac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 CAGAGTCTCTGACTCTTCTTGCTCTCGTCTCTCTCTTCTCCGTCCTTGCTCTCCTTTTAC 480
Query 472 tctccctaactgttctcGTTGTCCTTGGGACTGTAAACTTCTAAAGAACCCGGGTCGGAT 531
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 481 TCTCCCCAACTGTTCTCGTTGTCCTTGGGACTGTAAACTCCTAAAGAATCCGGGTCGGAT 540
Query 532 CCTCCACGGTTGCGAATCAACCCACGGGTCGTTATCTGAACAAGGCTGTCAAGGAGATCT 591
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCTCCACGGTTGTGAATCAACCCACGGGTCGTTATCTGAACAAGGCTGTCAAGGAGATCT 600
Query 592 TCTTGGGTTTCTTCAAGATTTCTTCACTAGATTTGGATTTGAAGTTGAATGGGACGAATC 651
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTGGTTTTCTTCAAGATTTCTTCACTAGATTTGGATTTGAAGTTGAATGGGACGAATC 660
Query 652 TCAAGATCCTTACTTTGCTAAATGCAGAGATTGTCAAATCAAGAATGGTGTTTGCGGGTT 711
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAAGATCCATACTTCATTAAATGCAGAGATTGTCAAATCAAGAATGGTGTTTGCGGGTT 720
Query 712 TAATTCGACCCACCCGAATCAAGATTTCCTCTGTTTCCACAAATCAAGATCCGAATTAGT 771
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TAATTCGACCCACCCGAATCAAGATTTCATCTGTTTCCACAAATCAAGATCCGAATTAGT 780
Query 772 AACACACAGAGAT-TC--TAAAAGAGTCAATCACATCGCTGTGTTGTCTCTTATCTTCGC 828
||| || |||||| | |||||||||||||| || |||||||||||||||||||||||
Sbjct 781 AACTCAAAGAGATAACAACAAAAGAGTCAATCATATTGCTGTGTTGTCTCTTATCTTCGC 840
Query 829 TTTGACATGTCTCTTACTTGCTTTCTCCGTCGCCGTAGCGATTTTCCGATCACGGAGAGC 888
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 841 TTTGACTTGTCTCTTACTTGTTTTCTCCGTCGCCGTAGCGATTTTCCGATCACGAAGAGC 900
Query 889 GAG-TTTCTTGTCTTCAGTCAACGAAGAAGACCCGGCTGCTCTCTTCCTCCGCCGTCACC 947
|| ||| || || ||| |||| |||||||||||||||||||| |||||||| | ||||
Sbjct 901 TAGCTTT-TTATCCTCAATCAATGAAGAAGACCCGGCTGCTCTGTTCCTCCGTCACCACC 959
Query 948 GCTCCGCCGCTCTTCTCCCACCAGTCTTCACCTTCGAAGAGCTCGAATCCGCCACAAACA 1007
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 GCTCCGCCGCTCTTCTCCCACCAGTCTTCACCTTCGAAGAACTCGAATCCGCCACAAACA 1019
Query 1008 AATTCGACCCCAAGCGCAAAATTGGGGACGGTGGCTTCGGTTCTGTTTACTTAGGCCAAC 1067
|||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||
Sbjct 1020 AATTCGACCCCAAGCGAAAAATCGGAGACGGTGGTTTCGGTTCTGTTTACTTAGGCCAAC 1079
Query 1068 TCAGCGACGGACAACTCCTCGCCGTTAAATTCCTCCACCATCACCACGGCGCAACCGCCG 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCAGCGACGGACAACTCCTCGCCGTTAAATTCCTCCACCATCACCACGGCGCAACCGCCG 1139
Query 1128 CCGCCACCGAGCATTGCAAAGCATTCTCAATGAAATCATTCTGCAATGAGATCTTGATCC 1187
| |||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct 1140 CAGCCACCGAGCATTGCAAAGCTTTCTCAATGAAGTCTTTTTGCAATGAGATTTTGATCC 1199
Query 1188 TCTCTTCAATCAACCATCCTAACCTCGTCAAGCTCCATGGCTATTGCTCTGATCCTAGAG 1247
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1200 TTTCTTCAATCAACCATCCTAACCTCGTCAAGCTCCATGGCTATTGCTCTGACCCGAGAG 1259
Query 1248 GGCTTCTTCTTGTCCATGATTACGTCACTAACGGTACTCTCGCCGATCATCTTCACGGCC 1307
| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1260 GACTTCTTCTTGTTCACGATTACGTCACTAACGGTACTCTCGCTGATCATCTTCACGGCA 1319
Query 1308 GGAGACCGAAGATGACGTGGCGTGTAAGGTTAGATATTGCTG-TACAAACAGCTTTAGCT 1366
|| ||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||
Sbjct 1320 GGGGACCGAAGATGACGTGGCGTGTAAGGTTAGATATTGC-GTTGCAAACGGCTTTAGCT 1378
Query 1367 ATGGAGTATCTTCACTTCGATATTGTTCCACCGGTTGTTCATAGAGACATAACTTCGTCG 1426
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1379 ATGGAGTATCTTCACTTCGATATTGTTCCTCCGGTTGTTCATAGAGATATAACTTCGTCG 1438
Query 1427 AATATCTTTGTGGAGAAGGATATGACAATCAAAGTCGGAGACTTTGGTCTCTCTAGGCTC 1486
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 AATATCTTTGTGGAGAAGGATATGAAAATCAAAGTCGGAGACTTTGGTCTCTCTAGGCTC 1498
Query 1487 TTGGTGTTGTCAGAGACGACGGTGAATTCAGCTACTTCGTCTGATTATGTTTGTACCGGA 1546
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1499 TTGGTGTTTTCAGAGACGACTGTGAATTCAGCTACTTCGTCTGATTACGTTTGTACCGGA 1558
Query 1547 CCACAAGGTACGCCCGGTTATTTAGACCCGGATTATCACCGGTCTTTTCGGTTAACGGAG 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CCACAAGGTACGCCCGGTTATTTAGACCCGGATTATCACCGGTCTTTTCGGTTAACGGAG 1618
Query 1607 AAGAGTGACGTGTATAGTTACGGCGTCGTTTTGATGGAGTTGATTACGGGGATGAAAGCT 1666
|| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1619 AAAAGTGACGTGTATAGCTACGGTGTCGTTTTGATGGAGTTGATTACGGGTATGAAAGCG 1678
Query 1667 GTTGATCAACGACGTGAGAAGAGGGATATGGCTTTAGCGGATCTTGTTGTATCCAAGATC 1726
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1679 GTTGATCAACGACGTGAGAAGAGGGACATGGCTTTAGCGGATCTTGTTGTATCCAAGATT 1738
Query 1727 CAAATGGGTCTTTTGGATCAAGTGATTGACCCGTTGCTTGCGTTAGACGGCGATGATGTG 1786
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1739 CAAATGGGTCTTTTGGATCAGGTGATTGACCCCTTGCTTGCGTTAGACGGCGATGATGTG 1798
Query 1787 GCGGCGGTGACTGACGGATTCGGTGTTGCGGCGGTTGCTGAGCTGGCGTTCCGGTGTGTT 1846
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GCTGCGGTGAGTGACGGATTCGGTGTTGCGGCGGTTGCTGAGCTGGCGTTCCGGTGTGTT 1858
Query 1847 GCGACGGATAAGGATGATCGTCCGGACGCTAAAGAGATTGTTCAGGAGTTGAGGAGGATT 1906
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1859 GCGACGGATAAGGATGATCGTCCGGATGCTAAAGAGATTGTTCAGGAGTTGAGGAGGATT 1918
Query 1907 AGGAGCCATACACGTGTGAG-GGATGATGACGTGGCGAAAGATTGACTGTTGGATTAGAT 1965
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1919 AGGAGCCATACACGTGT-AGCGGATGATGACGTGGCGAAAAATTGACTGTTGGATTAGAT 1977
Query 1966 TACGGATGACGTAATGTGAATGTGATGTAAGTAAAGTGTTGTTGACTGGTCTCATTGTGT 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 TACGGATGACGTAATGTGAATGTGATGTAAGTAAAGTGTTGTTGACTGGTCTCATTGTGT 2037
Query 2026 ACGTGTTGAATTTTGTCGGGAATTGCAAACCTTCTAACCCAACTAGAAGGAGCCTCACAT 2085
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2038 ACGTGTTGAATTTTGTCGGGAATTGCAAACCTTCTACCCCAACTAGAAGGAGCTTCACAT 2097
Query 2086 GTGTGTGTG--ATGTAATCCTAGTACAGTAGTACACACGTAACTCGAAGTTTGTATTTT 2142
||||||||| | |||||||||||||| | |||| ||||||||||||||||||||
Sbjct 2098 GTGTGTGTGTGACGTAATCCTAGTACAC-A---CACA--TAACTCGAAGTTTGTATTTT 2150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5