BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497161
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69900.1 | Symbols: | Actin cross-linking protein | chr1:26... 1729 0.0
> AT1G69900.1 | Symbols: | Actin cross-linking protein | chr1:26326381-26327831
REVERSE LENGTH=1348
Length=1348
Score = 1729 bits (936), Expect = 0.0
Identities = 1122/1210 (93%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 1 AATGGAGTTATTCACCAAAGGAACGGCCGTTAGATTACGGAGCTGTCACGAAAAATACAT 60
|||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||
Sbjct 15 AATGGAGTTATTCAATAATGGAACGGCCGTTAGATTACGGAGCTGTCACGATACATACAT 74
Query 61 CTACGCCGTCGACGATGAAAAAACCGTCCGTCAAAGCTCTGACGGAACGTCACGGCAATC 120
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 75 CTACGCCGTCGAGGATGAAAAAACCGTCCGTCAAAGCTCTGACGGAACCTCACGGCAATC 134
Query 121 GTTATGGACGGTGGAGATGGTGCCACGTAAACCCAAATTCATCCGTCTCAAGAGCTGTTA 180
| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||
Sbjct 135 GCTATGGACGGTGGAGATGGTTCCACGTAAACCAAAATTCATACGTCTCAAGAGCTGCTA 194
Query 181 CGGCAAGTATTTAACGGCGAGCGAGTCGTCATTTCTTCTGGGAATGACCGGAGCGAAAGT 240
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 195 CGGCAAGTATTTAACGGCGAGCGAGTCGTCGTTTCTTCTGGGAATGACCGGCGCGAAAGT 254
Query 241 CATCCAAACGCCGCCGTATCGTCAAGCGGAGCATGAAAGCGACTGGGAGCCAATCAGAGA 300
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 255 CATCCAAACGCCGCCGTTTCGTCAAGCGGAGCATGAAAGCGACTGGGAACCAATCAAAGA 314
Query 301 AGAGTCAACGGTCAAACTCATGTCGTGGAACGAGAAATATTTACGTGGAAACGGAGGAGC 360
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 315 AGAGTCAACGGTTAAACTCATGTCGTGGAACGAGAAATATTTACGTGGGAACGGAGGAGC 374
Query 361 TCCGCCGTGGAAGAACTCTGTGACGTGTGATCGTGAGCCACATATTTCAGCGACGAAGAA 420
||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 375 TCCGCCGTGGAGGAACTCTGTGACGTGTGATCGTGAGCCGCACATCTCAGCGACGAAGAA 434
Query 421 ATGGATCTTGTGGTCTGTGGAGCTCGTTGAGAATCCTGATAAGGTTTTGTTTGCTGATCG 480
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 435 ATGGATCTTGTGGTCTGTGGAGGTTGTTGAGAATCCTGATAAGGTTTTGTTTGCTGATCG 494
Query 481 TTTTTCATCACCGGCTTCGAGTTTTAACTCGTCGG--T-CTCCGATGGGTCAAATCACGG 537
||||||||||||||||| |||||||||||||||| | |||||| |||||||||| |||
Sbjct 495 GTTTTCATCACCGGCTTCTAGTTTTAACTCGTCGGTCTCCTCCGACGGGTCAAATCTCGG 554
Query 538 GTCACCGGTTCAGAAATTACCT-ACTTTTGGATCTTCTGAATCTATCGGGTCGGATCCTG 596
|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 555 GTCACCGGGTCAGAAATT-GCTGACTTTTGGATCTTCTGAATCTATCGGGTCGGATCCTG 613
Query 597 GGTCACTTGCATCGGTTTCTTCTTCGAAACTTATGTTTACTCCGTCAAGGTCGGGTACAT 656
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGTCACTTGTATCAGTTTCTTCTTCGAAACTTATGTTTACTCCGTCAAGGTCGGGTACAT 673
Query 657 TGTCCCCAAAACCAACAGAGAGGAAAAGTTCGAAGAAGATAATTGTAGAAAATGTATCAG 716
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 674 TGTCCCCAAAACCAACAGAGAGGAAATGTTCGAAGAAGATAATAGTAGAAAATGTATCGG 733
Query 717 CGATGGAAATATTCCGGGATGCGAAATCGGTGCGTTTACGAAGC-A---A-AT-AT---A 767
|||||||||||||||||||||||||||||||||||||||||||| | | || || |
Sbjct 734 CGATGGAAATATTCCGGGATGCGAAATCGGTGCGTTTACGAAGCTATGCACATCATGGGA 793
Query 768 --T----GACTGCTGATGACGACGAAGAGAGTGTGGTGATGGGCCGAACCGGGTCATCTA 821
| || |||||||||||| |||||| ||||| | |||||| || |||||||||||
Sbjct 794 AATATTTGATTGCTGATGACGATGAAGAGGGTGTGATAATGGGCAAAAACGGGTCATCTA 853
Query 822 AAGAAGCTCGATGGAGAGTTGAAATGGTACCCGGATCCGAAAAGGCGATCCGGTTAAAGA 881
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 854 AAGAGGCTCGATGGAGAGTTGAAATGGTACCAGGATCCGAAAAGGCGATCCGGTTAAAGA 913
Query 882 GCTGCCACGGTGGATACTTGACGGCGTCGAATGAGCGGTTTTTGTTGGGAGCGACGGGGC 941
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 914 GCTGCCATGGTGGATACTTGACGGCGTCCAATGAGCGGTTTTTGTTGGGAGCGACCGGGC 973
Query 942 ATAAGGTGGTGCAGTCTAGGAGGATCCGGGCCGGTGAGCCGGCGGGAGAGTGGGAGCCGG 1001
||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||
Sbjct 974 ATAAGGTGGTGCAGTCTAGGAAGATTCGTGCCGATGAGCCGGCGGGAGAGTGGGAGCCGG 1033
Query 1002 TGAAAGAAGGTTCAAATGTTAAGCTGAGGAGTAGAAACGGCGGGAATTATTTGAGAGCCA 1061
||||||||||||||| || ||| | ||||| |||||||||||||||||||| |||||||
Sbjct 1034 TGAAAGAAGGTTCAAGGGTGAAGTTAAGGAGCAGAAACGGCGGGAATTATTTAAGAGCCA 1093
Query 1062 ATGGGGGAGTGCCACCTTGGAGGAATACGGTTACACATGATTCACCAAACCGGAGTGTTA 1121
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||
Sbjct 1094 ATGGGGGAGTGCCACCTTGGAGGAATTCGGTTACGCATGATTTACCAAACCGGAGTGCTA 1153
Query 1122 CGCAGAATTGGGTGGTTTGGGACGTTGATGTGGTCGATATTCATGGGACAGGTTGATTCA 1181
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1154 CGCAGAGTTCGGTGGTTTGGGACGTTGATGTGGTCGATATTCATGGGACCGGTTGATTCA 1213
Query 1182 TGACTTTAAA 1191
| ||||||||
Sbjct 1214 TTACTTTAAA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5