BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497162
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69880.1 | Symbols: ATH8, TH8 | thioredoxin H-type 8 | chr1:... 815 0.0
> AT1G69880.1 | Symbols: ATH8, TH8 | thioredoxin H-type 8 | chr1:26321479-26322993
FORWARD LENGTH=707
Length=707
Score = 815 bits (441), Expect = 0.0
Identities = 566/624 (91%), Gaps = 17/624 (3%)
Strand=Plus/Plus
Query 1 AAGAGCTTCTACTCAAAACCATTTGCTTCTTTCTGATT----AGAGAGAGAGACACACAC 56
||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1 AAGAGCTTCTACTCAAAACCATTTGCTTCTTTCTGCTTAGAGAGAGAGAGAGACACACTC 60
Query 57 AATGGGTGCTAACGTTTCTTCTCCAGAGCAGAGATTTCAGGTGACCAACTTCCGTTCAAG 116
||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||
Sbjct 61 AATGGGTGCTAACGTTTCTACTCCAGACCAGAGATTTCAGGTAACCCACTTCCGTTCAAC 120
Query 117 GAAGCCATGGACACCTCAACCTGAGATTTATCCTTTCAATGTCAACAGTCCTCGTATTGT 176
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 121 GAAGCCATGGACACCTCGACCTGAGATTTATCCTTTCAAAGTCAACAGTCCTTGTATTGT 180
Query 177 GGAGATCAAGAACATGAATCAGTGGAAATCTCGGCTCAACGCTCTTAATGACACCAACAG 236
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 181 GGAGATCAAGAACATGAATCAGTGGAAATCTAGGCTCAACGCTCTTAAAGACACCAACAA 240
Query 237 GCTGCTGGTGATTGAGTTTACAGCCAAATGGTGTGGACCATGTAAATCCCTTGAACCAGA 296
|||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 241 GCTGCTGGTGATCGAGTTCACAGCTAAATGGTGTGGACCATGTAAAACCCTTGAACCAAA 300
Query 297 GCTTGAAGAGTTGGCAGCTAAGTACACCGATGTTGAGTTCGTGAAGATTGATGTCGATGT 356
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCGAAGAGTTGGCTGCTAAATACACCGATGTTGAGTTCGTGAAGATTGATGTCGATGT 360
Query 357 ATTAATGAGCGTATGGATGGAATACAACCTTAACACTTTGCCTGCGATTGTATTCATGAA 416
||||||||||| |||||||| | |||||||| |||||| ||||||||||||||||||||
Sbjct 361 CTTAATGAGCGTGTGGATGGAGTTCAACCTTAGCACTTTACCTGCGATTGTATTCATGAA 420
Query 417 AAGAGGAAGAGAAGTAGACAGGGTTGTGGGTGTGAAGGTTGATGAGGTAGAGAGGAAACT 476
|||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 421 AAGAGGCCGAGAAGTAGACATGGTTGTGGGTGTGAAGGTTGATGAGTTAGAGAGGAAACT 480
Query 477 CCACAAATATACACAATCCTTCTTCTAAAAAGAGAAGCTTTCAATTACTTAACATGCCAA 536
| | ||||| |||||||||||||||| || | | || |||| || |||| |||||
Sbjct 481 CAATAAATACACACAATCCTTCTTCT-----GA-ACG-TTG-AATTCCT-AACACGCCAA 531
Query 537 ACAAAACTCCTCATCACCTTATGCCAAGAATATATATAGTTG-CTACTATGTATAAATAA 595
||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||
Sbjct 532 ACAAAACTCCTCATCACCTTACGCCAAGAATATATA--GTTTACTACTATGTATAGATAA 589
Query 596 A-TGTTTGAACGACGATTCAACAA 618
| ||||||||||||||||||||||
Sbjct 590 AATGTTTGAACGACGATTCAACAA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5