BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497163
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69870.1 | Symbols: NRT1.7 | nitrate transporter 1.7 | chr1:... 3363 0.0
> AT1G69870.1 | Symbols: NRT1.7 | nitrate transporter 1.7 | chr1:26316027-26320220
FORWARD LENGTH=2167
Length=2167
Score = 3363 bits (1821), Expect = 0.0
Identities = 2057/2171 (95%), Gaps = 15/2171 (1%)
Strand=Plus/Plus
Query 1 ACTACACCCAAAAAAGCTTCTAACAGAGAGAAAGTG--TGTATGTTGTGCCCACTC-C-G 56
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
Sbjct 1 ACTACACCCAAAAAAGCTTCTAACAAAGAGAAAGTGTCTGTATGTTGTGCCCACTCTCTA 60
Query 57 CATTTATCAATCA-TATCATGTGTGTTACCTTGATTGCAAAAAAGTGAGAATATATTCTC 115
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTTATCAATCACT-TCATGTGTGTTACCTTGATTGCAAAAAAGTGAGAATATATTCTC 119
Query 116 ACAACATTAAATCCACCCCAAAATCGAAGTGAGTATATTACGAGTTTAGTAATATCTTAG 175
||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||
Sbjct 120 ACAACATTAAATCCACCCCGAAATCGAAGTGAGTATATCACGAGTGTAGTAATATCTTAG 179
Query 176 AGATGGTTTTGGAGGATAGAAAGGACGG---TTCTTTGCCACGACCG-TCCGGTAGTTTC 231
|||||||||||||||||||||||||||| ||||||||| || || ||||||||||||
Sbjct 180 AGATGGTTTTGGAGGATAGAAAGGACGGTTCTTCTTTGCCGGGA-CGATCCGGTAGTTTC 238
Query 232 TCCAAATCGTCACCGTCGGAGATGGATGTTGTTGATCAGTACAATCGGAAAAGTTCGCCG 291
|| |||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||
Sbjct 239 TCTAAATCGTCACCGTCGGAGTTGGATGTTGTTGATCCCTACAAGCGGATAAGTTCGCCG 298
Query 292 GAATCAAGT-TTGGGTGCCGAGAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTC 350
| ||| | | |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGATCTA-TATTGGATGCTGAGAAGGTAGAGAAAAAGCCTGGAGGATGGAGAGCCGTCTC 357
Query 351 GTTCATTTTAGGAAATGAGACGCTGGAGAGACTGGGATCGATAGGGTTGTTGGCAAACTT 410
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 GTTCATTTTAGGAAATGAGACGCTGGAGAGACTGGGATCGATAGGATTGTTGGCAAACTT 417
Query 411 CATGGTTTATCTAACCAAAGTGTTTCACTTAGAACAAGTCGACGCAGCAAATGTCATCAA 470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 CATGGTTTATCTAACCAAAGTGTTTCACTTAGAACAAGTCGACGCTGCAAATGTCATCAA 477
Query 471 CATCTGGTCTGGTTTCACCAATCTCACTCCTCTCGTCGGAGCGTATATCTCAGACACTTA 530
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CATTTGGTCAGGTTTCACCAATCTCACTCCTCTCGTCGGAGCGTATATCTCAGACACTTA 537
Query 531 CGTTGGCCGCTTCAAGACCATCGCTTTCGCCTCATTCGCCACTCTCCTCGGACTAATAAC 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTTGGCCGCTTCAAGACCATCGCTTTCGCCTCATTCGCCACTCTCCTCGGACTAATAAC 597
Query 591 AATTACACTCACAGCATCGCTTCCTCAACTCCACCCAGCATCATGCAACAGCCAGAACCC 650
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 AATTACACTCACAGCATCGTTTCCTCAACTCCACCCAGCATCATGCAACAGCCAGGACCC 657
Query 651 ACTCAGTTGCGGCGGTCCGAATAAGCTCCAGTTCGGAGTTTTGCTATTGGGACTCTGTTT 710
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 ACTCAGTTGCGGCGGTCCGAATAAGCTCCAGATCGGAGTTTTGCTATTGGGACTCTGTTT 717
Query 711 CCTCTCTGTAGGGAGTGGAGGAATACGACCATGTAGCATCCCTTTTGGGGTGGATCAGTT 770
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 718 CCTCTCCGTAGGGAGTGGAGGAATACGACCTTGTAGCATCCCTTTTGGGGTTGATCAGTT 777
Query 771 TGACCAACGAACTGAGGAAGGGATTAAAGGAGTGGCCAGTTTCTTCAACTGGTATTACAT 830
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 TGACCAACGAACTGAGGAAGGGGTTAAAGGAGTGGCCAGTTTCTTCAACTGGTATTACAT 837
Query 831 GACTTTCACTGTGGTTCTGATCATTACACAGACCGTAGTTGTGTATATCCAGGACCAAGT 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 GACTTTCACTGTGGTTCTGATCATTACACAGACCGTAGTTGTGTATATCCAGGATCAAGT 897
Query 891 CAGTTGGATCATCGGGTTTAGTATCCCTACCGGACTCATGGCTCTTGCGGTGGTTATGTT 950
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 CAGTTGGATTATCGGTTTTAGTATCCCTACCGGACTCATGGCTCTTGCGGTTGTTATGTT 957
Query 951 TTTTGCCGGAATGAAGCGTTATGTCTACGTTAAACCTGAAGGGAGTATATTCTCTGGGAT 1010
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 958 TTTTGCCGGAATGAAGCGTTATGTCTACGTTAAACCAGAAGGAAGTATATTCTCTGGGAT 1017
Query 1011 CGCTCAAGTTATTGTGGCAGCTCGTAAGAAGCGAAAGCTGAAAGTCCCTTCAGAAGATGA 1070
|||||||||||| |||||||||||||||||||||||||||||| | || | ||||||||
Sbjct 1018 CGCTCAAGTTATCGTGGCAGCTCGTAAGAAGCGAAAGCTGAAACTTCCGGCGGAAGATGA 1077
Query 1071 CGGCACTGTGAACTATTACGACCCAGCCATAAAATCTAGCGTGTTGTCCAAGTTACACCG 1130
||||||||| | |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1078 CGGCACTGTCACCTATTACGACCCAGCCATCAAGTCTAGCGTGTTATCCAAGTTACACCG 1137
Query 1131 CAGTAACCAATTCAGGTTTCTTGACAAAGCCGCGGTGATTATAGAAGGTGATCTAACACC 1190
||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1138 CAGTAACCAATTCAGGTGTCTTGACAAAGCCGCGGTGGTTATAGAAGGTGACCTAACACC 1197
Query 1191 CGAGGGAGCTCCCGCGGACAAGTGGCGGTTATGCAGCGTCCAAGAAGTGGAAGAAGTGAA 1250
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CGAGGGACCTCCCGCAGACAAGTGGCGGTTATGCAGCGTCCAAGAAGTGGAAGAAGTGAA 1257
Query 1251 GTGTTTGATCCGAATTGTTCCTGTTTGGTCGGCAGGAATAATCTCACTCGCGGCCATGAC 1310
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1258 GTGTTTGATCCGAATTGTTCCTATCTGGTCGGCCGGAATAATCTCACTCGCGGCCATGAC 1317
Query 1311 AACACAAGGCACTTTCACGGTCTCTCAAGCTTTGAAAATGGATCGAAACTTGGGTCCTAA 1370
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1318 AACACAAGGCACTTTCACGGTCTCTCAAGCTTTGAAAATGGATCGAAACTTAGGTCCTAA 1377
Query 1371 GTTCGAGATTCCAGCTGGTTCACTCTCCGTTATCTCTCTCCTCACAATCGGCATCTTTCT 1430
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1378 ATTCGAGATTCCGGCTGGTTCACTCTCCGTCATCTCTCTCCTCACAATCGGCATCTTTCT 1437
Query 1431 ACCCTTTTACGACCGCGTTTTTGTCCCATTCATGCGGCGAATCACTGGCCATAAATCCGG 1490
||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1438 TCCCTTCTACGACCGCGTTTTTGTACCATTCATGCGGCGAATCACCGGCCATAAATCCGG 1497
Query 1491 AATCACACTCCTCCAACGGATAGGAACAGGGATCGTTTTCGCGATCTTTTCTATGATCGT 1550
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AATCACACTCCTCCAAAGGATAGGAACAGGGATCGTTTTCGCGATCTTTTCTATGATCGT 1557
Query 1551 TGCGGGCATTGTGGAGCGCATGAGGCGCATACGCGCCATCAATGCCGGAGATCCAACCGG 1610
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1558 TGCGGGCATTGTGGAGCGTATGAGACGCATACGCTCCATCAATGCCGGAGATCCAACGGG 1617
Query 1611 AATGACTCCAATGTCAGTGTTTTGGCTTTCACCGCAGCTAATTCTGATGGGACTATGTGA 1670
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1618 AATGACTCCAATGTCGGTGTTTTGGCTTTCGCCGCAGCTAATTCTCATGGGACTATGTGA 1677
Query 1671 AGCATTCAATATTATCGGACAAATAGAGTTCTTCAACAGTCAGTTTCCGGAGCACATGAG 1730
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1678 AGCATTCAATATCATCGGACAAATTGAGTTCTTCAACAGTCAGTTTCCAGAGCACATGAG 1737
Query 1731 AAGCATTGCTAATTCTCTCTTCTCTTTATCCTTCGCCGGTTCAAGCTACCTTAGTAGTTT 1790
||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1738 AAGTATCGCTAACTCTCTCTTCTCTTTATCGTTCGCCGGTTCGAGCTACCTTAGTAGTTT 1797
Query 1791 TCTCGTGACTGTCGTTCATAAATTCTCCGGTGGGCATGATCGTCCGGATTGGCTAAACAA 1850
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CCTTGTGACTGTCGTTCATAAATTCTCCGGTGGGCATGATCGTCCGGATTGGCTAAACAA 1857
Query 1851 GAATCTCAACGCGGGAAAATTAGATTACTTCTATTATCTGATTGCGATTATGGGTGTGGT 1910
||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 1858 GAATCTCAACGCGGGAAAATTGGATTACTTCTATTATCTGATTGCGGTTTTGGGTGTGGT 1917
Query 1911 TAATCTGGTTTACTTTTGGTATTGTGCTCGGGGGTACCGGTACAAGGTCGGTTTACAGAT 1970
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1918 TAATCTGGTTTACTTTTGGTATTGTGCTCGGGGATACCGGTACAAGGTCGGTTTACCGAT 1977
Query 1971 TGAAGACTTTGAGGAGGACAAGTCCTCCGATGATGTTGAGATGACTTCAAAGAAATCGAT 2030
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1978 TGAAGACTTTGAGGAGGACAAGTCCTCCGATGATGTTGAGATGACTTCGAAGAAATCGAT 2037
Query 2031 GAAATGATTTAATAGACTGGCCTTAGGAACAACAAGAAAATTATCGAGGTTGTTTGAATG 2090
|||||||||||||||||| ||||||| |||||||||| ||| |||| |||||||||||
Sbjct 2038 GAAATGATTTAATAGACTATCCTTAGGGACAACAAGAAGATTGTCGATGTTGTTTGAATA 2097
Query 2091 ATTACGATGACAATGTATATCTATCATAATATATAAGAACTAGAATATATAATAAAACTT 2150
||||| |||||||||||| | |||||||||| ||||||||||||||| |||||||| ||
Sbjct 2098 ATTACTATGACAATGTATGT--ATCATAATATGTAAGAACTAGAATATTTAATAAAATTT 2155
Query 2151 TACTTTTCATT 2161
||| |||||||
Sbjct 2156 TACCTTTCATT 2166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107178163575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5