BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497165
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42200.1 | Symbols: | RING/U-box superfamily protein | chr5... 854 0.0
> AT5G42200.1 | Symbols: | RING/U-box superfamily protein | chr5:16860467-16861232
FORWARD LENGTH=766
Length=766
Score = 854 bits (462), Expect = 0.0
Identities = 644/727 (89%), Gaps = 31/727 (4%)
Strand=Plus/Plus
Query 1 AGAGAGCAATAGACGGTGT-AAGATGCACTACACACGCATCTCACCGGTTTTAGTACCAT 59
||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 34 AGAGAGCAAGAGACGGTGTAAAGATGCACTACACACGCATCTCGCCGGCTTTAGTACCAT 93
Query 60 CTCCGCCACCAACAACCGCCGTTGAATCTAGCGGCGGTGGGCCGATGATAGCTACCGTTT 119
||| ||||||| |||| | |||||||||||| |||||| ||||||||||||| ||||
Sbjct 94 CTCTATCACCAACCGCCGCGGCTGAATCTAGCGGTGGTGGGACGATGATAGCTACTGTTT 153
Query 120 TCATGGCCCTCCTCCTTCCTTGCGTTGGCATGTGCATCGTCTTCCTAATATATCTCTTCC 179
|||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 154 TCATGGCCCTTCTCCTCCCCTGCGTCGGCATGTGCATCGTCTTCCTAATCTATCTATTCC 213
Query 180 TCTTGTGGTGTTCCACACGTCGTCGTATTGAACGTCTTCGATTTGCGGAACCTGTTAAAC 239
|||||||||| |||||||| |||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 214 TCTTGTGGTGCTCCACACGGCGTCGTATCGAACGCCTTCGATTTGCTGAACCGGTTAAAC 273
Query 240 CGGTCACCGGTAAAGGCCTTTCGGTGTTAGAGCTCGAGAAAATCCCTAAACTCACCGGAA 299
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 274 CGGTCACAGGTAAAGGCCTTTCGGTGTTGGAGCTCGAGAAAATCCCTAAACTCACCGGAA 333
Query 300 AAGAGCTTGCCATAATAGCTAGGTCGACGGAGTGTGCCGTTTGCCTTGAAGATATAGAGA 359
|||||| ||| |||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 334 GAGAGCTAGCCGTAATAGCTAGATCAACGGAATGTGCTGTTTGCCTTGAAGATATAGAGA 393
Query 360 GTGGTCAATCGGGTCGTCTAGTTCCCGGTTGCAACCATGGGTTTCACCGATTATGTGCTG 419
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 394 GTGGTCAATCGACTCGTCTAGTTCCCGGTTGCAACCATGGGTTTCACCAATTATGTGCTG 453
Query 420 ACACGTGGCTATCTAACCACACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACA 479
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATACGTGGCTATCTAACCACACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACC 513
Query 480 TTCCTCAATGTAATGAAAATCAAAGTCCATGTTAAAAACAGAATCTTT-AAAATTATTCT 538
| |||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||
Sbjct 514 TACCTCAATGTAATGAAAATCAAAGTCCATGTTAGAAACAGAAT-TTTCAAAAACATTCT 572
Query 539 TTCCTTCTTTTTTACTCGTTTTGTGTACTT-----GT----C--TT------GTTTTGTG 581
|||||||||||||||||||||||||||||| || | || ||||||||
Sbjct 573 TTCCTTCTTTTTTACTCGTTTTGTGTACTTCTCTTGTTTTTCCCTTTTCTTAGTTTTGTG 632
Query 582 TAAGCGTTATAGAGAGA-A-GTTTCCAGGTA-T---TAG--TTGTT-TTTTGTT--GTAC 630
||||||||||||||||| | |||||||||| | ||| ||||| |||| || ||||
Sbjct 633 TAAGCGTTATAGAGAGAGAAGTTTCCAGGTTGTAACTAGCCTTGTTGTTTTTTTTTGTAC 692
Query 631 ATGAAATTAATTTTAGAGTAAAGTAAAAAATTTATAGTTTTGCCATTGTATTTACAACAA 690
||||||||| |||||||||||| || ||||||| |||| || |||||||||||||||||
Sbjct 693 ATGAAATTAGTTTTAGAGTAAATTACGAAATTTACAGTTATGTCATTGTATTTACAACAA 752
Query 691 TTTTTCT 697
|||||||
Sbjct 753 TTTTTCT 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5