BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497166
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25140.1 | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar... 3007 0.0
> AT3G25140.1 | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr3:9154711-9156845 FORWARD
LENGTH=1920
Length=1920
Score = 3007 bits (1628), Expect = 0.0
Identities = 1785/1860 (96%), Gaps = 14/1860 (1%)
Strand=Plus/Plus
Query 1 CCCAATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCGATTAA-CGGTG 59
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 34 CCCAATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCCA-TAATCGGTG 92
Query 60 TCAAAATCAGACTCACAGCTTTCGCTTCCACTATCGCActcttcctcttcactctctcct 119
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 GCAGAATCACACTCACAGCTTTCGCTTCCACTATCGCACTCTTCCTCTTCACTCTCTCCT 152
Query 120 tcttcttcgtttcagattctaacgattcacctgatcttcttcttcCCGGTGTAGAGTACT 179
||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 153 TCTTCTTCGCTTCAGATTCTAACGATTCTCCTGATCTCCTTCTTCCCGGTGTTGAGTACT 212
Query 180 CTAATGGAGTCGGATCTAGAAGATCCATGTTGGATATTAAATCGGATCCGCTTAAGCCAC 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 213 CTAATGGAGTCGGATCTAGAAGATCCATGTTGGATATCAAATCGGATCCGCTTAAGCCAC 272
Query 240 GGTTGATTCAGATCCGGAAACAAGCTGATGATCATCGGTCATTAGCATTAGCTTATGCTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GGTTGATTCAGATCCGGAAACAAGCTGATGATCATCGGTCATTAGCATTAGCTTATGCTT 332
Query 300 CTTACGCGAGGAAGCTTAAGTTAGAGAATTCGAAACTCGTTAGGATCTTCGCTGATCTTT 359
|||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 333 CTTACGCGAGAAAGCTTAAGCTCGAGAATTCGAAACTCGTCAGGATCTTCGCTGATCTTT 392
Query 360 CGAGGAATTACACGGATCTGATTAATAAACCGACGTATCGAGCTTTGTATGATTCTGATG 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 393 CGAGGAATTACACGGATCTGATTAACAAACCGACGTATCGAGCTTTGTATGATTCTGATG 452
Query 420 GAGCTTCGATTGAAGAATCTGTGCTTAGGCAATTTGAGAAAGAAGTTAAGGAACGGATTA 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GAGCCTCGATTGAAGAATCTGTGCTTAGGCAATTTGAGAAAGAAGTTAAGGAACGGATTA 512
Query 480 AAATGACTCGTCAAGTGATTGCTGAAGCTAAAGAGTCTTTTGATAATCAGTTGAAGATTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AAATGACTCGTCAAGTGATTGCTGAAGCTAAAGAGTCTTTTGATAATCAGTTGAAGATTC 572
Query 540 AGAAGCTGAAAGATACGATTTTCGCGGTTAACGAACAGTTAACTAATGCTAAGAAGCAAG 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 573 AGAAGCTGAAAGATACGATTTTCGCTGTTAACGAACAGTTAACTAATGCTAAGAAGCAAG 632
Query 600 GTGCGTTTTCGAGTTTGATTGCTGCGAAATCGATACC-AAAGGGATTGCATTGTCTTGCG 658
||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct 633 GTGCGTTTTCGAGTTTGATCGCTGCGAAATCGATTCCGAAAGG-ATTGCATTGTCTTGCT 691
Query 659 ATGAGGTTGATGGAAGAGAGGATTGCTCACCCTGAGAAGTATACTGATGAAGGGAAAGAT 718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ATGAGGCTGATGGAAGAGAGGATTGCTCACCCTGAGAAGTATACTGATGAAGGGAAAGAT 751
Query 719 AGACCGTCGG-AGCTTGAGGATCCGAATCTTTACCATTACGCTATATTTTCGGATAATGT 777
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 AGACCG-CGGGAGCTCGAGGATCCGAATCTTTACCATTACGCTATATTTTCGGATAATGT 810
Query 778 GATTGCGGCGTCAGTGGTTGTGAACTCTGCTGTGAAGAATGCTAAGGAGCCGTGGAAGCA 837
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GATTGCGGCTTCGGTGGTTGTGAACTCTGCTGTGAAGAATGCTAAGGAGCCGTGGAAGCA 870
Query 838 TGTCTTTCACGTTGTGACTGATAAGATGAATCTTGGGGCTATGCAGGTTATGTTTAAACT 897
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 871 TGTTTTTCACGTTGTGACTGATAAGATGAATCTTGGAGCTATGCAGGTTATGTTTAAACT 930
Query 898 GAAGGAGTATAAAGGAGCTCATGTAGAAGTTAAAGCTGTTGAGGACTATACGTTTTTGAA 957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 931 GAAGGAGTATAAAGGAGCTCATGTAGAAGTTAAAGCTGTTGAGGATTATACGTTTTTGAA 990
Query 958 CTCTTCGTATGTGCCTGTGTTGAAGCAATTGGAATCTGCGAATCTTCAGAAGTTCTATTT 1017
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 991 CTCTTCGTATGTGCCTGTGTTGAAGCAGTTAGAATCTGCGAATCTTCAGAAGTTTTATTT 1050
Query 1018 CGAGAATAAGCTCGAGAATGCAAC-AAAGGATACCACGAATATGAAGTTCAGGAACCCCA 1076
||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 1051 CGAGAATAAGCTCGAGAATGCGACGAAAG-ATACCACGAATATGAAGTTCAGGAACCCCA 1109
Query 1077 AGTATTTGTCTATATTGAATCACTTGAGGTTTTATTTACCCGAGATGTACCCGAAACTAC 1136
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 AGTATTTATCTATATTGAATCACTTGAGGTTTTATTTACCCGAGATGTACCCGAAACTAC 1169
Query 1137 ATAGGATACTGTTTTTGGACGATGATGTGGTTGTGCAGAAGGATTTAACGGGGCTGTGGG 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1170 ATAGGATACTGTTTTTGGACGATGATGTGGTTGTGCAGAAGGATTTAACGGGTCTGTGGG 1229
Query 1197 AGATCGATATGGATGGGAAAGTGAATGGAGCTGTAGAGACTTGTTTTGGGTCGTTCCATC 1256
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1230 AGATTGATATGGATGGGAAAGTGAATGGAGCTGTAGAGACTTGTTTTGGGTCGTTTCATC 1289
Query 1257 GGTATGCTCAATACATGAATTTCTCACATCCTTTGATTAAAGAGAAGTTTAATCCCAAAG 1316
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1290 GGTACGCTCAATACATGAATTTCTCACATCCTTTGATCAAAGAGAAGTTTAATCCCAAAG 1349
Query 1317 CATGCGCGTGGGCTTATGGAATGAACTTCTTTGATCTTGATGCTTGGAGAAGAGAGAAGT 1376
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CATGTGCGTGGGCGTATGGAATGAACTTCTTTGATCTTGATGCTTGGAGAAGAGAGAAGT 1409
Query 1377 GCACAGAAGAATATCACTACTGGCAAAATCTGAACGAGAACAGGGCTCTTTGGAAACTGG 1436
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1410 GCACAGAAGAATATCACTACTGGCAAAATCTGAACGAGAACAGGGCTCTATGGAAACTGG 1469
Query 1437 GAACATTACCACCGGGACTGATCACGTTTTACTCGACCACAAAGCCGCTGGACAAATCAT 1496
| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1470 GGACGTTACCACCGGGACTGATCACCTTTTACTCAACCACAAAGCCGCTGGACAAATCAT 1529
Query 1497 GGCATGTGCTTGGGCTGGGTTACAATCCGAGCATTAGCATGGATGAGATCCGCAACGCTG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GGCATGTGCTTGGGCTGGGTTACAATCCGAGCATTAGCATGGATGAGATCCGCAACGCTG 1589
Query 1557 CAGTGGTACACTTCAACGGTAACATGAAGCCGTGGCTGGACATAGCTATGAACCAGTTTC 1616
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1590 CAGTGGTACACTTCAACGGTAACATGAAGCCATGGCTTGACATAGCTATGAACCAGTTTC 1649
Query 1617 GACCACTTTGGACCAAACACGTCGACTATGACCTTGAGTTTGTTCAGGCTTGCAATTTCG 1676
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1650 GACCACTTTGGACCAAACACGTCGACTATGACCTCGAGTTTGTTCAGGCTTGCAATTTTG 1709
Query 1677 GTCTCTGAACTCTGAAATTTTTTCTTTATCATCAAAATCTGAAAGCATATGTTGTT---- 1732
| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1710 GCCTCTGAACTATGAAAATTTT-CTTTATCATCAAAATCTGAAAGCATATGTTGTTTGTT 1768
Query 1733 ACTTCAGTTCTACGAAGTTTTAACCTTAGTTTTTGTTTGTGCTTATTTATATATTTTTGG 1792
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1769 ACTTCAGCTCTACGAAGTTTTAACCTTAGTTTTTGTTTGTGTTTATTTATATATTTTTGG 1828
Query 1793 GGGTTTAGAATCATAATCTGTATTTTGTTCATAGCTGTCGTAATTCTATGGCAACCTATA 1852
|||||||| | | | | |||||||||||||||||| || | |||||||||||||||||
Sbjct 1829 GGGTTTAGTAGAACACT-TGTATTTTGTTCATAGCTATCTTTGTTCTATGGCAACCTATA 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5