BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497169
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 1129 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 1129 bits (611), Expect = 0.0
Identities = 721/775 (93%), Gaps = 4/775 (1%)
Strand=Plus/Plus
Query 2 ATCACCATGATTTTTCTCTTTACTACTCTCCAATTTTCTCTCTTCTCTTTGGCCCTTGTA 61
|||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 7 ATCACCATGACTTTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGTA 66
Query 62 ATCGCCGGTTACATTTTCCTCGGaaaaaaaTTGAGTAAAAGTGAAGTTGATAGCTCCACC 121
||| ||||||||||||||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 67 ATCTTTGGTTACATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGCTCCACG 126
Query 122 ATCCCAGAGCCATTAGGAGCTTTGCCTCTATTCGGCCACCTCCATCTATTGCGCGGCAAA 181
|| || |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 127 ATTCCTGAGCCATTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAAA 186
Query 182 GAACTCATTTGCAAGAAACTAGCTGCCATGTCCGAAAAACATGGTCCTATCTTCTCCCTT 241
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 187 AAACTCCTTTGCAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCTC 246
Query 242 AAGTTAGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AAGTTAGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTC 306
Query 302 ACCACCAACGACTTGGCT-CTAGCAACCAGACCCAATATAGCCTTTGGTCGGTATGTAGG 360
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 307 ACCACCAACGACTTGGCTAC-AGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGG 365
Query 361 CTACAACAATGCAATTCTGGCAT-TGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTA 419
|||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 366 CTACAACAATGCAAGTCTGAC-TCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTA 424
Query 420 AGATTGTCACCGTCCATCTATTCTCAAACCAGAGTATAGAGATGCTTGGTCACATTCGTT 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 425 AGATTGTCACCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTT 484
Query 480 CTTCAGAAGTAAACGCATTGATCAAACACCTATACAAAGGGGGTGGTGGCACTTCGATGG 539
|||||||||||||| | |||||||||||||||||||||||| |||||| ||||| || |
Sbjct 485 CTTCAGAAGTAAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAG 544
Query 540 TGAAGATTGACATGTTATTCGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGG 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGAAGATTGACATGTTATTTGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGG 604
Query 600 GGAAGAGGATTGGTTTCGGTGAAGTGAAGAGCGAGGAATGGCGTTATAAGGAAGCGTTGA 659
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 605 GGAAGAGGATTGGTTTCGGTGAAGTGAATAGCGATGAATGGCGTTATAAGGAGGCCCTGA 664
Query 660 AGCATAGCGTGTACTTGGCTGCGGTTCCTATGATAGGCGACGTTCTTCCATGGCTAGGAT 719
||||| ||| ||||||||||| | |||||||||||||||||||| |||||||| | ||||
Sbjct 665 AGCATTGCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGAT 724
Query 720 GGTTGGATTTTGCGAAAATTTCTCAAATGAAGAGATTATTTAAGGAGCTTGACTC 774
||||||||||||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 725 GGTTGGATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTC 779
Score = 1098 bits (594), Expect = 0.0
Identities = 701/752 (93%), Gaps = 9/752 (1%)
Strand=Plus/Plus
Query 775 CATTGTGAAGGCAACAATTTTGGTTCTCACATTAACGGGATCAGACAGCACATCCATCAC 834
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 915 CATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCACATCCATCAC 974
Query 835 TCTT-ACATGGGCAGTATCGCTGCTACTCAACAATCCAGCTGCTTTAAAAGCAGCACAAG 893
| || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 975 T-TTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAGCAGCACAAG 1033
Query 894 AAGAGATTGACAATTGTGTCGGGAAAGGTAGATGGGTTGAAGAATCCGACATACAAAACC 953
|||||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||||
Sbjct 1034 AAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGATATACAAAACC 1093
Query 954 TCAAGTATCTACAAGCTATTGTTAAGGAAACTCACCGACTTTACCCGCCGGCTCCTCTTA 1013
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1094 TCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCGGCTCCTCTAA 1153
Query 1014 CAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTGAGAAAGGCA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTGAGAAAGGCA 1213
Query 1074 CGCGCTTGCTCGTCAACATCTGGAAACTTCATAGGGATCCCAAGATCTGGCCTGACCCCA 1133
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGGCCTGACCCCA 1273
Query 1134 AAGCCTTTAAGCCTGAGAGGTTCATGGAAGAGAAATCACAATGTGAAAAGAGCGATTTTG 1193
|| ||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||
Sbjct 1274 AAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAGAGCAACTTTG 1333
Query 1194 AGTACATTCCTTTCAGTTCTGGAAGAAGGTCGTGTCCAGGGA-TCAATCTTGGTCTAAGA 1252
| |||||||||||| |||| ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 1334 AATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCC-GGGAGTCAATCTTGGTCTAAGA 1392
Query 1253 GTTGTACACTTCGTGTTGGCTCGGTTGCTTCAAGGGTTTGAGTTACGCAAAGTGTCTGGT 1312
||||||||||| || |||||| | |||||||||||||||||||||| ||||||||||| |
Sbjct 1393 GTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAAGTGTCTGAT 1452
Query 1313 GAACCACTGGATATGGCCGAAGGGCCTGGTTTAGACTTGCCAAAGATTAAACCGGTGGAA 1372
||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 1453 GAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAACCCGGTCGAA 1512
Query 1373 GTTGTTGTAACGCCTCGGCTCGACCCGGAGTTGTATAGTTTACTCTAAACCATTGTGTAC 1432
|| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1513 GTAGTTGTAATGCCTCGGCTCGACCCGAAGTTGTATAGTTTACTCTAAACCATTGTGTAC 1572
Query 1433 TCGATAATTTGTTAG-AGCTTCTTGTGATCATGCCTTTCTAATTTTAGACATGTATGGTG 1491
||||||||| || | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1573 TCGATAATTA-TTGGGAGCTTCTTGTGATCATGCCTTTCTGATTTTAGACATGTATGGTG 1631
Query 1492 GTCGATGGTATAAAAA--CAATTTGGGAAAGG 1521
|| ||||| |||||| ||||||||||||||
Sbjct 1632 -TCAATGGTTTAAAAAAACAATTTGGGAAAGG 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5