BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497170 Length=897 Score E Sequences producing significant alignments: (Bits) Value AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 671 0.0 AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 616 2e-175 AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 518 4e-146 > AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding protein | chr3:9171056-9172204 REVERSE LENGTH=1026 Length=1026 Score = 671 bits (363), Expect = 0.0 Identities = 666/801 (83%), Gaps = 65/801 (8%) Strand=Plus/Plus Query 1 ATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAG-GCATGTGGTTGAATTTATG 59 ||||||||| || | | ||||||||| ||||||||| ||| |||||||| |||||| | Sbjct 10 ATGTATTACAATCACGATCATCTCACTGCTTCAGGG-AAGAACATGTGGTCGAATTTCTA 68 Query 60 TGTACTGGTTGATGCGG-TGTTATGTTATATGAAGAAG---AACAACGTCGTACGACTGT 115 ||||||||||||| ||| || |||||||||||||||| |||||||||||| || ||| Sbjct 69 TGTACTGGTTGATACGGCGGTGATGTTATATGAAGAAGAAAAACAACGTCGTAAGATTGT 128 Query 116 CTCTGAAGAAGAAGCAGAAAGC-CAGAAGAGAATC-----T-T-TT----AG-ACAACAA 162 |||||||||||||| ||||| | |||||||||||| | | || || | ||||| Sbjct 129 CTCTGAAGAAGAAGAAGAAA-CACAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAACAA 187 Query 163 -A-AG-C--T--TAATG-G-GTTTTTAA-C-TTCTA-CTTCTTCATCGCTTATCGATATT 210 | | | | ||| | | || | ||| | |||||||||||||||||||| || Sbjct 188 GATCGTCTTTGGTAAAGAGACAACAAAAGCTTTC-AGCTTCTTCATCGCTTATCGATCTT 246 Query 211 AACCAGTTCCCTACTGATTCTGAGA-C--AGA---ACAAAACCATCTTCAGTTGCTATCT 264 |||||||||||| |||||||||||| | ||| || |||||||| ||||||||||||| Sbjct 247 AACCAGTTCCCTTCTGATTCTGAGATCGAAGACCCACTAAACCATCATCAGTTGCTATCT 306 Query 265 TCTTCATGTTTCATCCCCGCTGATTCCGAG--AC--GAAAACACTA---CAAAACCTAG- 316 ||||||||||||||| ||||||||| |||| || ||||| ||| | ||||| | Sbjct 307 TCTTCATGTTTCATCGCCGCTGATTTCGAGACACTACAAAACCCTAGTTCCGAACCTTGT 366 Query 317 --TT--CT-G-ACTC-TT-A-T-------GGCTGAGTCCGAGGAGAGGGAGACGAAAGAC 360 || || | |||| || | | ||||| ||||||| ||| |||||||||||| Sbjct 367 TCTTCACTCGTACTCTTTGATTGCAAGACGGCTGGGTCCGAGAAGACAGAGACGAAAGAC 426 Query 361 CCACAAAATCCTAA-TTCCCAATCTTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCG 419 |||| ||| ||||| ||||| || | || |||||||||||||||||||||||| || ||| Sbjct 427 CCACCAAACCCTAATTTCCC-ATGTCCTCTGTCTTTGTGCCTAACGGAGAACAAAAACCG 485 Query 420 CAAGAGACGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 CAAGAGACGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGC 545 Query 480 TCCTTCTTCAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACAT 539 ||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 546 TCCTTTTTCACAAACGGCGAGAGAGACGCCTGAGTGGCTTGTCAATGTGATGAGAGACAT 605 Query 540 GAAAGAAGTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAA 599 |||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct 606 GAAAGAAGCCAAAGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTTACTGATGTAAA 665 Query 600 CCCAACACAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGAC 659 |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| Sbjct 666 CCCAACACAGAACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGAC 725 Query 660 GTCTGTGGAGTCCATAATCATAAACGAAGACATCAACAATAATAAGAAGATTGGAGTGGG 719 ||||||||||| | ||||||| || |||||||||| || ||||||||||||||||||| Sbjct 726 TTCTGTGGAGTCAAGAATCATAGACAAAGACATCAAAAACGATAAGAAGATTGGAGTGGG 785 Query 720 AGTGATTCTCGTGGATCAACG 740 || |||||| ||||||||||| Sbjct 786 AGCGATTCTTGTGGATCAACG 806 > AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) | chr5:8128353-8129402 REVERSE LENGTH=1050 Length=1050 Score = 616 bits (333), Expect = 2e-175 Identities = 516/597 (86%), Gaps = 42/597 (7%) Strand=Plus/Plus Query 183 TTCTACTTCTTCATCGCTTATCGATATTAACCAGTTCCCTACTGATTCTGAGA-C--AGA 239 ||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| Sbjct 237 TTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACCGATTCTGAGATCGAAGA 296 Query 240 ---ACAAAACCATCTTC-AGTTGCTATCTTCTTCATGTTTCATCCCCGCTGATTCCGAGA 295 |||||||||||||| || |||||| |||||||||||||| ||||| ||||||||| Sbjct 297 CCCACAAAACCATCTTCAAG-GGCTATCCTCTTCATGTTTCATTGCCGCTAATTCCGAGA 355 Query 296 C--GAA-A--AC---A--CTA---CAAAACCTAG---TT--CT--GACTC--T--T---- 327 | || | || | ||| || ||||| | || || ||||| | | Sbjct 356 CAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGTCACA 415 Query 328 --ATGGCTGAGT-CCGAGGAGAGGGAGACGAAAGACCCACAAAATCCTAA-TTCCCAATC 383 | |||||||| || | ||| ||||||||||||||||| ||| ||||| ||||| || Sbjct 416 AGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC-ATG 473 Query 384 TTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAG 443 | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 474 TACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAAAG 533 Query 444 GAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTTCAGGGACAGCGAGAGA 503 |||||||| ||||||||||||||||||||| |||||||||| |||| || |||||||| Sbjct 534 GAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGAGAGA 593 Query 504 GACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAAAGACGCTAAACT 563 ||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| | Sbjct 594 GACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTAAATT 653 Query 564 GATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAAT 623 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 654 GATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCTCAAT 713 Query 624 GCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAA 683 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 GCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAA 773 Query 684 CGAAGACATCAACAATAATAAGAAGATTGGAGTGGGAGTGATTCTCGTGGATCAACG 740 ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| Sbjct 774 CGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 830 > AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) | chr3:9071105-9072184 FORWARD LENGTH=1080 Length=1080 Score = 518 bits (280), Expect = 4e-146 Identities = 329/353 (93%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 389 TGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGAAGC 448 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | Sbjct 509 TGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGAAAC 568 Query 449 GTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTT-CAGGGACAGCGAGAGAGACG 507 |||| |||||| ||||||| |||||||||||||||| || |||||||||||||||| ||| Sbjct 569 GTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TTCCAGGGACAGCGAGAGATACG 627 Query 508 CCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAAAGACGCTAAACTGATA 567 ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 628 CCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTGATC 687 Query 568 TTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCT 627 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 688 TTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATGCCG 747 Query 628 TTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAACGAA 687 |||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||| ||| Sbjct 748 TTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAGGAA 807 Query 688 GACATCAACAATAATAAGAAGATTGGAGTGGGAGTGATTCTCGTGGATCAACG 740 ||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 808 GACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43804176184 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5