BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497170
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 671 0.0
AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 616 2e-175
AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 518 4e-146
> AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding
protein | chr3:9171056-9172204 REVERSE LENGTH=1026
Length=1026
Score = 671 bits (363), Expect = 0.0
Identities = 666/801 (83%), Gaps = 65/801 (8%)
Strand=Plus/Plus
Query 1 ATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAG-GCATGTGGTTGAATTTATG 59
||||||||| || | | ||||||||| ||||||||| ||| |||||||| |||||| |
Sbjct 10 ATGTATTACAATCACGATCATCTCACTGCTTCAGGG-AAGAACATGTGGTCGAATTTCTA 68
Query 60 TGTACTGGTTGATGCGG-TGTTATGTTATATGAAGAAG---AACAACGTCGTACGACTGT 115
||||||||||||| ||| || |||||||||||||||| |||||||||||| || |||
Sbjct 69 TGTACTGGTTGATACGGCGGTGATGTTATATGAAGAAGAAAAACAACGTCGTAAGATTGT 128
Query 116 CTCTGAAGAAGAAGCAGAAAGC-CAGAAGAGAATC-----T-T-TT----AG-ACAACAA 162
|||||||||||||| ||||| | |||||||||||| | | || || | |||||
Sbjct 129 CTCTGAAGAAGAAGAAGAAA-CACAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAACAA 187
Query 163 -A-AG-C--T--TAATG-G-GTTTTTAA-C-TTCTA-CTTCTTCATCGCTTATCGATATT 210
| | | | ||| | | || | ||| | |||||||||||||||||||| ||
Sbjct 188 GATCGTCTTTGGTAAAGAGACAACAAAAGCTTTC-AGCTTCTTCATCGCTTATCGATCTT 246
Query 211 AACCAGTTCCCTACTGATTCTGAGA-C--AGA---ACAAAACCATCTTCAGTTGCTATCT 264
|||||||||||| |||||||||||| | ||| || |||||||| |||||||||||||
Sbjct 247 AACCAGTTCCCTTCTGATTCTGAGATCGAAGACCCACTAAACCATCATCAGTTGCTATCT 306
Query 265 TCTTCATGTTTCATCCCCGCTGATTCCGAG--AC--GAAAACACTA---CAAAACCTAG- 316
||||||||||||||| ||||||||| |||| || ||||| ||| | ||||| |
Sbjct 307 TCTTCATGTTTCATCGCCGCTGATTTCGAGACACTACAAAACCCTAGTTCCGAACCTTGT 366
Query 317 --TT--CT-G-ACTC-TT-A-T-------GGCTGAGTCCGAGGAGAGGGAGACGAAAGAC 360
|| || | |||| || | | ||||| ||||||| ||| ||||||||||||
Sbjct 367 TCTTCACTCGTACTCTTTGATTGCAAGACGGCTGGGTCCGAGAAGACAGAGACGAAAGAC 426
Query 361 CCACAAAATCCTAA-TTCCCAATCTTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCG 419
|||| ||| ||||| ||||| || | || |||||||||||||||||||||||| || |||
Sbjct 427 CCACCAAACCCTAATTTCCC-ATGTCCTCTGTCTTTGTGCCTAACGGAGAACAAAAACCG 485
Query 420 CAAGAGACGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CAAGAGACGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGC 545
Query 480 TCCTTCTTCAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACAT 539
||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 546 TCCTTTTTCACAAACGGCGAGAGAGACGCCTGAGTGGCTTGTCAATGTGATGAGAGACAT 605
Query 540 GAAAGAAGTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAA 599
|||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 606 GAAAGAAGCCAAAGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTTACTGATGTAAA 665
Query 600 CCCAACACAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGAC 659
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 666 CCCAACACAGAACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGAC 725
Query 660 GTCTGTGGAGTCCATAATCATAAACGAAGACATCAACAATAATAAGAAGATTGGAGTGGG 719
||||||||||| | ||||||| || |||||||||| || |||||||||||||||||||
Sbjct 726 TTCTGTGGAGTCAAGAATCATAGACAAAGACATCAAAAACGATAAGAAGATTGGAGTGGG 785
Query 720 AGTGATTCTCGTGGATCAACG 740
|| |||||| |||||||||||
Sbjct 786 AGCGATTCTTGTGGATCAACG 806
> AT5G24050.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050
Score = 616 bits (333), Expect = 2e-175
Identities = 516/597 (86%), Gaps = 42/597 (7%)
Strand=Plus/Plus
Query 183 TTCTACTTCTTCATCGCTTATCGATATTAACCAGTTCCCTACTGATTCTGAGA-C--AGA 239
||||||||||||||||||||||||| |||||||||||||||| |||||||||| | |||
Sbjct 237 TTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACCGATTCTGAGATCGAAGA 296
Query 240 ---ACAAAACCATCTTC-AGTTGCTATCTTCTTCATGTTTCATCCCCGCTGATTCCGAGA 295
|||||||||||||| || |||||| |||||||||||||| ||||| |||||||||
Sbjct 297 CCCACAAAACCATCTTCAAG-GGCTATCCTCTTCATGTTTCATTGCCGCTAATTCCGAGA 355
Query 296 C--GAA-A--AC---A--CTA---CAAAACCTAG---TT--CT--GACTC--T--T---- 327
| || | || | ||| || ||||| | || || ||||| | |
Sbjct 356 CAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGTCACA 415
Query 328 --ATGGCTGAGT-CCGAGGAGAGGGAGACGAAAGACCCACAAAATCCTAA-TTCCCAATC 383
| |||||||| || | ||| ||||||||||||||||| ||| ||||| ||||| ||
Sbjct 416 AGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC-ATG 473
Query 384 TTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAG 443
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 474 TACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAAAG 533
Query 444 GAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTTCAGGGACAGCGAGAGA 503
|||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||
Sbjct 534 GAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGAGAGA 593
Query 504 GACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAAAGACGCTAAACT 563
||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
Sbjct 594 GACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTAAATT 653
Query 564 GATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAAT 623
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 GATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCTCAAT 713
Query 624 GCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAA 683
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAA 773
Query 684 CGAAGACATCAACAATAATAAGAAGATTGGAGTGGGAGTGATTCTCGTGGATCAACG 740
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 774 CGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 830
> AT3G24850.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080
Score = 518 bits (280), Expect = 4e-146
Identities = 329/353 (93%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 389 TGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGAAGC 448
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 509 TGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGAAAC 568
Query 449 GTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTT-CAGGGACAGCGAGAGAGACG 507
|||| |||||| ||||||| |||||||||||||||| || |||||||||||||||| |||
Sbjct 569 GTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TTCCAGGGACAGCGAGAGATACG 627
Query 508 CCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAAAGACGCTAAACTGATA 567
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 628 CCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTGATC 687
Query 568 TTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCT 627
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 688 TTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATGCCG 747
Query 628 TTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAACGAA 687
|||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 748 TTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAGGAA 807
Query 688 GACATCAACAATAATAAGAAGATTGGAGTGGGAGTGATTCTCGTGGATCAACG 740
||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 808 GACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5