BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497180
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43720.1 | Symbols: | Protein of unknown function (DUF2361)... 1548 0.0
> AT5G43720.1 | Symbols: | Protein of unknown function (DUF2361)
| chr5:17557166-17559354 REVERSE LENGTH=1371
Length=1371
Score = 1548 bits (838), Expect = 0.0
Identities = 924/966 (96%), Gaps = 3/966 (0%)
Strand=Plus/Plus
Query 2 CTAACGCCGAACAAAG-a-aaaaaaCACAACCCCTAATTTTTGTCTCTCAACTCTTCCTC 59
|||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 16 CTAACGCCGAACAAAGAAGAAAAAACACAACCCCTAATTTTGGTCTCTCAACTCTTCCTC 75
Query 60 CTTCTTCAACTACTTCAAAAGCTTTGGCAAAATCCTTTAGTCATGGCGCACGGAGGTTAT 119
||||||||||| | | ||||||||| ||||| ||||| || ||||||||||||||| |||
Sbjct 76 CTTCTTCAACTTC-TAAAAAGCTTTAGCAAACTCCTTCAGCCATGGCGCACGGAGGCTAT 134
Query 120 GCCAAGAGAAGAGTTTCGGAACCTAATCAGGCGGCGGGAAGTAGTCGGAGGTCGAAAGTA 179
||||||||||| | ||||||||| || ||| |||||||||| ||||||||||||||||||
Sbjct 135 GCCAAGAGAAGGGATTCGGAACCAAAACAGACGGCGGGAAGCAGTCGGAGGTCGAAAGTA 194
Query 180 TTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAATCAGATGCGTTCCGTTGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 195 TTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAATCAGATGCGTTCTGTTGAA 254
Query 240 CGCTTTCTTCGTAAAGATTTGCCTCCTGAAGTAAGAGAGTCTTTAGTAGAGAAGTTGGAA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 255 CGCTTTCTTCGTAAAGATTTGCCTCCTGAAGTAAGAGAGTCTCTAGTAGAGAAGTTGGAA 314
Query 300 GATTTGAAGAAGCAGCAAGACGCTCATACCCGTCTTGCTGTTGAACGTAAAATATTCCTT 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 315 GATTTGAAGAAGCAGCAAGACGCTCATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTT 374
Query 360 AGGAACAGAAAGATTAAGTTCTTTGAGCGGAGAAAGATCGAAAGGAGTATTAGACGTCTT 419
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 375 AGGAACAGAAAGATTAAGTTCTTTGAGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTT 434
Query 420 GAGAAGTTACAACGTACTTCATCTGCTCATGTGGGCGATACAGATATAGCTGAGCAACTA 479
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 435 GAGAAGTTACAACGTACTTCATCTGCTCATGTGGGAGATGTAGATATAGCTGAGCAACTC 494
Query 480 AGTAAACTCAAAGAAGACCTTGAGTATGTTCGGTTCTTCCCGAAAAATGAGAAGTATGTA 539
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 495 AGTAAACTCAAAGAAGATCTTGAATATGTTCGGTTCTTCCCGAAAAATGAGAAATATGTA 554
Query 540 TCTCTTTTTACTGGAGCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGAAG 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 555 TCACTTTTTACTGGAGCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAG 614
Query 600 CAGATCAAAGCCAATATTATTGTTGCTGCTGCTAGTGGGAAAGAGTTAGAAGAGACAGGG 659
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 615 CAGATCAAAGCCAATATTATTGTTGCTGCTGCTAGTGGGAAGGAGTTAGAAGAGACGGGG 674
Query 660 AGTGAAGACGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCA 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGTGAAGATGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCA 734
Query 720 AGCGATGAAGCAGACGCAGATGATGAATTGACCGATAAAAGCGCAAAGGAGGCTGCTTCT 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 735 AGCGATGAAGCAGACGCAGATGATGAATTGACTGATAAAAGCGCAAAGGAGGCTGCTTCT 794
Query 780 AGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAAAGGAATCAGAAGCAAAAC 839
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 AGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAACGGAATCAGAAGCAAAAC 854
Query 840 TCTGATAGGGCTTTAATGCCTCCACCACAAGCAAGGTTTGAATCAAATTATAGAAAGAAT 899
|||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 855 TCTGATAGAGCTTTAATGCCACCACCACAAGCAAGGTTTGAATCAAATTCTAGGAAGAAT 914
Query 900 TCATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAAACAGAAGA 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TTATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAAACAGAAGA 974
Query 960 AGTGAG 965
||||||
Sbjct 975 AGTGAG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5