BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497182
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47860.3 | Symbols: | Phototropic-responsive NPH3 family pr... 2604 0.0
> AT2G47860.3 | Symbols: | Phototropic-responsive NPH3 family
protein | chr2:19599948-19602192 FORWARD LENGTH=2112
Length=2112
Score = 2604 bits (1410), Expect = 0.0
Identities = 1648/1757 (94%), Gaps = 39/1757 (2%)
Strand=Plus/Plus
Query 158 AGTTTCCCCTCGTCTCTCGGAGTGGAAGAATCCGGAAACTTGTTCTGGAATCAAAAGACA 217
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AGTTTCCTCTCGTCTCTCGGAGTGGAAGAATCCGGAAACTTGTTCTGGAATCAAAAGACA 320
Query 218 AGAACCTTAACCTAGCCG-TAGTTCCAGGCGGCTCAGAATCGTTCGAGCTCGCTGCAAAG 276
|||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 321 CGAACCTGAACCTAGCCGCT-GTTCCAGGCGGCTCAGAATCGTTCGAGCTTGCTGCAAAG 379
Query 277 TTCTGCTACGGCGTCGGCGTCCAAT-TCAACTCGGCCAACATTGCGGCTTTGCGGTGCGT 335
|||||||||||||| |||||||||| | |||||| ||||||||||||| |||| |||||
Sbjct 380 TTCTGCTACGGCGTTGGCGTCCAATAT-AACTCGTCCAACATTGCGGCGCTGCGATGCGT 438
Query 336 GGCTCATTACCTTGAGATGACAGAAGAGTTGTCGGAGAAGAACCTGGAGGCGAGAACAGA 395
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 439 GGCTCATTACCTGGAGATGACAGAAGACTTGTCAGAGAAGAACCTCGAGGCGAGAACAGA 498
Query 396 GGCCTACCTCAAAGACTCCATCTTT-AATGACATTTCGAATTCGATCACTGTTCTTCACT 454
||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 499 GGCCTACCTGAAAGACTCCAT-TTTCAATGACATATCGAATTCGATCACTGTTCTTCACT 557
Query 455 CCAGCGAGAGGCTACTGCCTGTAGCTGAAGAGATCAACCTCGTCGGGAGGCTGGTCAACG 514
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CCTGCGAGAGGCTACTGCCTGTAGCTGAAGAGATCAACCTCGTCGGGAGGCTGGTCAACG 617
Query 515 CAATCGCTGTAAACGCCTGCAAAGAACAGCTAGCCTCTGGTTTGCTCAAGCTTGATCAGA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CAATCGCTGTAAACGCCTGCAAAGAACAGCTAGCCTCTGGTTTGCTCAAGCTTGATCAGA 677
Query 575 ATTTCAGCTGCGGCGTGCCGGAGACTGAGAAACCTTGTGACTGGTGGGGGCGCTCTCTTC 634
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 678 GTTTCAGCTGCGGCGTCCCGGAGACTGCGAAACCTTGTGACTGGTGGGGTCGCTCTCTTC 737
Query 635 CCATCCTCAAGCTCGATTTCTTCCAGAGAGTTCTCTCCGCCATGAAATCCAAAGGTCTCA 694
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CCATCCTCAAGCTTGATTTCTTCCAGAGAGTTCTCTCCGCCATGAAATCCAAAGGTCTCA 797
Query 695 ATCACGACATTATCAGTGACATCCTCATGAGCTACGCTCGCAAGTCACTGCAAATCATCA 754
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 798 ATCACGACATTATCAGTGACATCCTTATGAGCTACGCTCGCAAATCACTGCAGATCATCA 857
Query 755 GAGAACCGAGTCTCGTCAAATCAGATTCCGATCTGCAGAGGAAACAGCGAATCGTCCTTG 814
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 858 GAGAACCGAATCTCGTCAAATCAGATTCCGATCTTCAGAGGAAACAGCGAATCGTCCTTG 917
Query 815 AAGCGGTCGTGGGGCTCCTCCCAACGCAAGCGAACAAAAGCTCAATTCCGATATCGTTCC 874
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 918 AAGCGGTCGTCGGGCTCCTCCCAACGCAAGCGAACAAAAGCTCGATTCCGATCTCGTTCC 977
Query 875 TCTCTAGCTTGTTGAAGACCGCTATAGGATCTGGAACCTCCGTCTCTTGCAGATCGGATC 934
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 978 TCTCTAGCTTGTTGAAGACCGCTATAGGATCTGGCACCTCCGTCTCTTGCAGATCCGATC 1037
Query 935 TGGAGAGACGGATCAGCCACCAGCTCGACCAGGCGATCCTGGAAGACATCCTTATTCCGG 994
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 1038 TGGAGAGACGGATCAGCCACCTGCTCGACCAGGCCATCCTTGAAGACATCCTTATTCCGG 1097
Query 995 CGAACATGGGCGCCATGTACGACACCGACTCGGTGCAGAGAATCTTCTCCATGTTCCTGA 1054
||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||
Sbjct 1098 CGAACATCGGCGCCATGTACGACACCGACTCGGTGCAGAGGATTTTCTCAATGTTCTTGA 1157
Query 1055 ACCTTGACGAGTGCGACTACAGAGATGATGACGACGACGAGGACGCTGGAGATGCGGTGG 1114
|||||||||||||||| |||||||||||||| ||||||||||| | | | |||||||
Sbjct 1158 ACCTTGACGAGTGCGAGTACAGAGATGATGATGACGACGAGGA-G--G-AC--GCGGTGG 1211
Query 1115 ACGAGAGCGAGATGGCGATTTACGATTTCGAGGGGGCTGAGTCTCCGAAACAGAGCTCCA 1174
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1212 ACGAGAGCGAGATGGCCATGTACGATTTCGAGGGGGCTGAGTCACCGAAACAGAGCTCCA 1271
Query 1175 TCTTCAAGGTGTCGAAGCTGATGGATAGTTATCTCGCTGAGGTGGCTCTCGACTCGAGCC 1234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1272 TCTTCAAGGTGTCGAAGCTGATGGATAGTTATCTCGCTGAGGTGGCTCTGGACTCGAGCC 1331
Query 1235 TCCCTCCCTCCAAATTCATAGCTCTCGCAGAGCTTCTCCCTGACCATGCTCGCGTCCTCT 1294
| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1332 TTCCTCCCTCCAAGTTTATAGCACTCGCAGAGCTTCTCCCTGACCATGCTCGCGTCGTCT 1391
Query 1295 GCGATGGTCTCTACCGAGCCGTTGATATCTTCCTCAAGGTTCATCCCCACATGAAAGATT 1354
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1392 GCGATGGCCTCTACCGAGCCGTTGATATCTTCCTCAAGGTTCACCCCCACATGAAAGATT 1451
Query 1355 CAGAACGTTACCGTCTCTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCA 1414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 CGGAACGTTACCGTCTCTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCA 1511
Query 1415 GCCATGCGGCGCAAAATGAGAGGCTTCCGGTTCAGATTGCTGTTCAAGTCCTGTTCTACG 1474
|||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1512 GCCACGCGGCGCAAAACGAGAGACTTCCGGTTCAGATTGCGGTTCAAGTCCTGTTCTACG 1571
Query 1475 AACAGACACGGCTCAAGAACGCCATGACCAGCGGCGGTGGCAC-GA-G---C---C-AAA 1525
||||||||||||||||||||||||||||||||||||||||||| | | | | |||
Sbjct 1572 AACAGACACGGCTCAAGAACGCCATGACCAGCGGCGGTGGCACAGGCGGTTCGAACCAAA 1631
Query 1526 GCCAGTTCTTCTTGTTCACAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCGATCTCGC 1585
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1632 GCCAGTTCTTCTTGTTCCCAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCCATCTCGC 1691
Query 1586 CGCGGGACAACTATGCGTCAGTGAGAAGAGAGAACAGAGAGCTGAGACTGGAAGTGGCCA 1645
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1692 CGAGGGACAACTATGCATCAGTGAGAAGAGAGAACAGAGAGCTGAGACTAGAGGTGGCCA 1751
Query 1646 GGATGAGGATGAGGCTAACGGACCTCGAGAAGGATCATGTTTCGATGAAGAAAGACTTCG 1705
||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||
Sbjct 1752 GGATGAGGATGAGGCTAACGGACCTGGAGAAAGATCATGTATCGATGAAGAGAGACTTCG 1811
Query 1706 TGAAGCCGCAGAGCAGGAGGAGGCGTTATGGAATGTTGAGGAAGCTCTCAAGAGGTCTGA 1765
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1812 TGAAGCCGCAGAGCAGGAGGAGGCGTTATGGAATGTTGAGGAAGCTCTCGAGAGGTCTGA 1871
Query 1766 ACAAGTTGAACGCAATCGTTTTGAGATTTAGGAGCAGCCAAAGT------A--AGC---A 1814
|||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1872 ACAAGTTGAACGCAATCGTTTTGAGATTTAGGAGCAGCCAAAGTGTTGCCAGTAGCGGTA 1931
Query 1815 -------TACGGAGGAGAAAACGAATTCGGAAAGACGATTCATGTTTCAGAAGAGAAGAT 1867
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 AAAAGCATACGGAGGAGAAAACGAATTCGGAAAGACGATTCATGTTTCAGAAGAGAAGAT 1991
Query 1868 GTCACTCTGTTTCTTGA 1884
|||||||||||||||||
Sbjct 1992 GTCACTCTGTTTCTTGA 2008
Score = 257 bits (139), Expect = 2e-67
Identities = 155/162 (96%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGTTGTTACTGTTCCTGAGTC---TAAGCAAAGTGTTGCTGCTAAAAGAGCGTTT 57
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 32 ATGGGTGTTGTTACTGTTCCTGAGTCTAATAAGCAAAGTGTTGCTGCTAAAAGAGCGTTT 91
Query 58 CGTCCAAGTTCCAGCATCAGACACACTCCTCAATGGCCTGTCTCGGACGTTACGAGTGAC 117
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CGTCCAAGTTCCAGTATCAGACACACTCCTCAATGGCCTGTCTCGGACGTTACGAGTGAC 151
Query 118 TTAACCATCGAAGTCGGCTCTGCCAGCTTTTCCCTTCACAAG 159
|||||||| |||||||||||||| | ||||||||||||||||
Sbjct 152 TTAACCATTGAAGTCGGCTCTGCGACCTTTTCCCTTCACAAG 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93272612610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5