BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497185
Length=2182
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47940.1 | Symbols: DEGP2 | DEGP protease 2 | chr2:19617986-... 3247 0.0
> AT2G47940.1 | Symbols: DEGP2 | DEGP protease 2 | chr2:19617986-19622232
REVERSE LENGTH=2278
Length=2278
Score = 3247 bits (1758), Expect = 0.0
Identities = 2071/2213 (94%), Gaps = 57/2213 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTCGCCGGCCGATATGGCCGTCTCCGTAGCAAACTGCAGCTTCTCCGTCCTCAAT 60
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 51 TCTCTCTCGCCGGCCGATATGGCCGCCTCCGTAGCAAACTGCTGCTTCTCCGTCCTCAAT 110
Query 61 GCCTCCGTTAAACTTCAATCTTCATGCGTCTCCTCACCGTGGTGTTTCGTAG-CCGCATC 119
|||||||||||| |||||||||| | | |||||||||||||||||||||| | |||||||
Sbjct 111 GCCTCCGTTAAAATTCAATCTTCGTCCATCTCCTCACCGTGGTGTTTCGT-GTCCGCATC 169
Query 120 -TCAGAAGA-------AG--TCGTTGAATCTTAAGAGGAAATCGTCGAGGTCTGATTCAT 169
|| | || || || | ||| |||||||||||||||||||||||||||||
Sbjct 170 GTC-GTTGACTCCCCGAGCTTCCTCCAATATTAAGAGGAAATCGTCGAGGTCTGATTCAC 228
Query 170 CATCTCCTATATTAAACCCAGAGAAGAATTACCCAGGTAGAGTTCGAGATGATAGTCCCA 229
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 229 CATCTCCTATATTAAACCCAGAGAAGAATTACCCAGGTAGAGTTCGAGATGAAAGTTCCA 288
Query 230 ATCCTCCTCAAAAAATGGCTTTCAAGGCCTTTGGGTCACCaaaaaaggagaaaaaaGAGC 289
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 289 ATCCTCCTCAAAAAATGGCTTTCAAGGCTTTTGGGTCACCCAAAAAGGAGAAAAAAGAGT 348
Query 290 CTCTCTCTGATTTTAGTCGAGACCAACAGACTGATCCTGGCAAGATTCACGATGCATCTT 349
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 349 CTCTTTCTGATTTTAGTCGAGACCAACAGACTGATCCTGCCAAGATTCACGATGCATCCT 408
Query 350 TTCTCAACGCTGTTTTTCGTAATGAATTGCTTTCTT-CTTCTTCAATTACT-CTGCTTGC 407
|||||||||||| || || || | | ||| || | | || | |||| || | ||
Sbjct 409 TTCTCAACGCTG-TTGTC--AA-G----G-TTTATTGC-AC-TC-A-TACTGCT-CCTGA 454
Query 408 TT-CTTCCTTCTTTGAACTACAAGCAAAGACAATGGAGCTAGCACTGGAAGGCATTGCTT 466
|| || ||| | || | | |||||||| |||| | |||| ||||||| | |||||
Sbjct 455 TTACTCCCTCCCATG-GC-AGAAGCAAAGGCAATTTA-CTAGTACTGGAA-G---TGCTT 507
Query 467 TTATGATTGGAGATGGCAAGCTCTTGACTAATGCCCATTGTGTCGAACATGATACACAGG 526
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 508 TTATGATTGGAGATGGCAAGCTCTTGACCAATGCCCATTGTGTCGAACACGATACACAGG 567
Query 527 TTAAAGTTAAGAGAAGGGGAGATGATCGAAAGTATGTGGCTAAGGTTTTAGTAAGGGGTG 586
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 568 TTAAAGTTAAGAGAAGGGGAGATGATCGAAAGTATGTGGCTAAGGTTTTAGTTAGGGGTG 627
Query 587 TGGACTGTGACATAGCTTTGCTTTCCGTAGAAAGCGAGGATTTCTGGAAAGGAGCTGAAC 646
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TGGACTGTGACATTGCTTTGCTTTCCGTAGAAAGCGAGGATTTCTGGAAAGGAGCTGAAC 687
Query 647 CACTGCGGCTGGGCCATTTACCCCGCCTTCAGGATTCAGTAACTGTCGTGGGATATCCTC 706
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 688 CACTACGGCTGGGCCATTTACCCCGCCTTCAGGATTCAGTTACTGTCGTGGGATATCCTC 747
Query 707 TTGGAGGAGATACAATCTCTGTTACAAAAGGGGTTGTATCACGTATAGAGGTAACATCAT 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 748 TTGGAGGAGATACAATCTCTGTTACAAAAGGGGTTGTATCACGTATAGAGGTAACATCTT 807
Query 767 ATGCTCATGGATCATCTGACTTGCTTGGAATTCAAATCGACGCTGCAATAAATCCAGGGA 826
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 808 ACGCTCATGGATCATCCGACTTGCTTGGAATTCAAATCGACGCTGCTATAAATCCAGGGA 867
Query 827 ATAGTGGTGGCCCTGCATTCAACGACCAGGGGGAATGTATTGGAGTAGCATTCCAGGTTT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 ATAGTGGTGGCCCTGCATTCAACGACCAGGGGGAATGTATTGGAGTAGCATTCCAGGTTT 927
Query 887 ACAGATCCGAAGAAACTGAAAATATTGGATATGTAATTCCAACAACCGTTGTTTCTCACT 946
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 928 ACAGATCCGAAGAAACTGAAAATATTGGATATGTGATTCCAACAACCGTTGTTTCTCACT 987
Query 947 TTTTGACTGATTATGAGAGGAACGGAAAGTACACTGGTTACCCTTGCCTTGGAGTGTTGC 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 988 TTTTGACTGATTATGAGAGGAACGGAAAGTACACTGGTTACCCTTGCCTTGGAGTATTGC 1047
Query 1007 TGCAGAAATTAGAAAATCCAGCTCTGCGGGAGTGCCTCAAAGTTCCTACAAATGAGGGGG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TGCAGAAATTAGAAAATCCAGCTCTGCGGGAGTGCCTCAAAGTTCCTACAAATGAGGGGG 1107
Query 1067 TACTGGTGCGAAGAGTTGAACCTACATCTGATGCAAGTAAAGTCCTGAAAGAGGGAGATG 1126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TTCTGGTGCGAAGAGTTGAACCTACATCTGATGCAAGTAAAGTCCTGAAAGAGGGAGATG 1167
Query 1127 TGATTGTAAGTTTTGATGATCTACATGTGGGATGTGAAGGAACTGTACCCTTCCGATCCA 1186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1168 TGATTGTAAGTTTTGATGATCTACATGTGGGATGTGAAGGAACTGTACCCTTCCGATCTA 1227
Query 1187 GTGAACGCATTGCATTCCGTTATCTCATCAGTCAAAAATTTGCAGGTGATATCGCTGAGC 1246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GTGAACGCATTGCATTCCGTTATCTCATCAGTCAAAAATTTGCAGGTGATATCGCTGAGA 1287
Query 1247 TTGGTATCATTAGAGCAGGAGAACATAAGAAAGTTCAAGTAGTTCTAAGACCACGAGTGC 1306
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1288 TTGGTATCATTAGAGCAGGAGAACATAAGAAAGTTCAAGTAGTTCTAAGGCCACGAGTGC 1347
Query 1307 ACCTGGTACCGTATCATATTGATGGAGGTCAACCATCATACATTATTGTTGCTGGTTTGG 1366
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1348 ACCTGGTACCGTACCATATTGATGGAGGTCAGCCATCATACATTATAGTTGCTGGTTTGG 1407
Query 1367 TGTTTACTCCGCTCTCAGAACCCCTGATAGAGGAGGAGTGTGAGGATACCATAGGCTTGA 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TGTTTACTCCGCTCTCAGAACCCCTGATAGAGGAGGAGTGTGAGGATACCATAGGCTTGA 1467
Query 1427 AATTGTTAACAAAGGCACGCTACTCTGTGGCAAGGTTCAGAGGAGAACAAATCGTCATCC 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 AATTGTTAACAAAGGCACGCTACTCTGTGGCAAGGTTCAGAGGAGAACAAATCGTCATCC 1527
Query 1487 TATCACAGGTCTTGGCAAATGAAGTAAACATCGGCTATGAGGACATGAATAACCAACAGG 1546
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1528 TATCACAGGTATTGGCAAATGAAGTAAACATCGGCTATGAGGACATGAATAACCAGCAGG 1587
Query 1547 TCCTGAAGTTCAATGGAATTCCTATAAGAAACATCCATCACTTGGCACATCTCATTGACA 1606
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1588 TCCTGAAGTTCAATGGAATTCCAATAAGAAACATCCATCACTTGGCACATCTCATTGATA 1647
Query 1607 TGTGCAAAGATAAGTATCTCGTTTTTGAGTTTGAAGACAACTATGTTGCTGTGTTGGAGA 1666
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1648 TGTGCAAAGATAAGTATCTAGTTTTTGAGTTCGAAGACAACTATGTTGCTGTGTTGGAGA 1707
Query 1667 GAGAAGCTTCAAATTCTGCTTCCTTGTGCATCCTCAAAGATTATGGAATTCCCTCGGAAA 1726
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 GGGAAGCTTCAAATTCTGCTTCCTTGTGCATCCTCAAAGATTATGGAATTCCCTCGGAAA 1767
Query 1727 GATCTGCTGATCTGCTCGAGCCATATGTAGATCCAATAGATGACACCCAAGCGCTTGACC 1786
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1768 GATCCGCTGATCTGCTCGAGCCATATGTTGATCCAATAGATGACACCCAAGCGCTTGACC 1827
Query 1787 AAGGTATTGGAGACAGCCCTGTGTCAAATCTGGAAATCGGCTTTGATGGACTGGTGTGGG 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 AAGGTATTGGAGACAGCCCTGTGTCAAATCTGGAAATCGGCTTTGATGGACTGGTGTGGG 1887
Query 1847 CATAAA-TGTTCAAAAAAGGCGTCCGCAGATGGAAGCCACAGAAAGCTCATACAGCTTCC 1905
|||||| | ||| |||| ||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1888 CATAAAATATTCGAAAA-GGCGTCCGCAGATGGAAACCACTGAAAGCTCATACAGCTTCC 1946
Query 1906 CCGAATTTATGGGAAAGCTTTCAGCTTTATCCTCATTCAGAAGGTCTTGAGCTGCTC--- 1962
||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 1947 CCGAACATATGGGAAAGCTTTCAGCTTCATCCTCATTCATAAGGTCTTGTGCTGCTCAAA 2006
Query 1963 C--AA-GTTTAGTGAATTCTTTCTTC---A---AAACCTCTAGGGATTGAGTTTAATAGA 2013
| || |||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 2007 CTCAAAGTTTAGTGAATTCTTTCTTCTTTATTCAAACCTCTATGGATTGAGTTTAATAGA 2066
Query 2014 AAGTTTGCCATGAGAATGCTTGACCATTGTGTGCAGATGAATGTA--CTGCTAAAAGCAT 2071
||||| |||||||||||||| | ||||||||| |||||||||||| |||||||||||||
Sbjct 2067 AAGTTGGCCATGAGAATGCTCGGCCATTGTGTTCAGATGAATGTATACTGCTAAAAGCAT 2126
Query 2072 TGCCAGAATCTTGACAAAAAGTCAACAAATTATGCAATGTCTGATTATT-TATGAGAAA- 2129
||||||||||| ||||||| ||||||||||||| || ||||||||| || |||||||||
Sbjct 2127 TGCCAGAATCTCGACAAAA-GTCAACAAATTATTCAGTGTCTGATT-TTCTATGAGAAAA 2184
Query 2130 TGAAATCCAGCAATGTCTTCTGTAACAGAAatatatatatatatatatatata 2182
|||||| |||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 2185 TGAAATGCAGCAATGTCTTCTGTGACTGTAATATATATATATATATATATATA 2237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108232375020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5