BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497195
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29130.1 | Symbols: LAC2, ATLAC2 | laccase 2 | chr2:12524889... 2918 0.0
> AT2G29130.1 | Symbols: LAC2, ATLAC2 | laccase 2 | chr2:12524889-12527747
REVERSE LENGTH=2070
Length=2070
Score = 2918 bits (1580), Expect = 0.0
Identities = 1920/2077 (92%), Gaps = 52/2077 (3%)
Strand=Plus/Plus
Query 1 ATATAAAACATATATCTTTCCTTCAATATTCAAACAAATATTGAACATGGTTACGTGGGT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ATATAAAACATATAACTTTCCTTCAATATTCAAACAAATATTGAACATGGTTACGTGGGT 62
Query 61 TTTGCATTATCTTCTCGTGGCATTTCTGA-TTGCCATTAGTTACAACATCGATGCAGCAT 119
|||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 63 TTTGAATTATCTTCTTGTGGCATTTCT-ATTTGCCATTAGTTACAACATCGATGCAGCAT 121
Query 120 CTGCAGGAATCACGCGGCACTACCAGTTCGATATTCAACTGAAAAACATCACAAGATTGT 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 122 CTGCAGGAATCACGCGGCACTACCAATTCGATATTCAACTGAAAAACATCACAAGGTTGT 181
Query 180 GCAAGACGAAAACAATCGTGACGGTCAATGGAAAATTCCCAGGACCTAAG-GTTACCGCA 238
||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct 182 GCAAGACAAAAACAATCGTGACGGTCAACGGAAAATTCCCAGGACCT-AGAGTTACCGCA 240
Query 239 AGAGAAGGAGATAATCTACAGATCAAAGTTGTTAATCATGTCTCTAATAACATTTCTATC 298
|||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 241 AGAGAAGGAGATAATCTACAAATCAAAGTTGTTAATCATGTATCCAATAACATTTCTATA 300
Query 299 CACTGGCACGGTATCCGGCAGCTAAGGAGCGGATGGGCGGATGGACCATCGTATGTGACA 358
|| ||||| |||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct 301 CATTGGCATGGTATCCGGCAGCTAAGGAGTGGTTGGGCGGATGGACCGTCCTATGTGACA 360
Query 359 CAATGTCCAATTCGGACCGGACAAAGTTATGTTTACAACTTCACGGTGACTGGACAAAGA 418
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATGTCCAATTCGGATGGGACAAAGTTATGTTTACAACTTCACGGTGACTGGACAAAGA 420
Query 419 GGAACCTTGTGGTGGCATGCTCATATTCAATGGATGAGAGCTACCGTGTACGGACCTTTG 478
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 421 GGAACCTTGTGGTGGCATGCTCATATTCAGTGGATGAGAGCTACTGTGTACGGACCATTA 480
Query 479 ATCATTCTCCCTAAACTCCATCAGCCTTACCCTTTTCCCAAACCCTACAAACAAGTCCCT 538
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCATTCTCCCTAAGCTTCATCAGCCTTACCCTTTTCCCAAACCCTACAAACAAGTCCCT 540
Query 539 ATAATCTTTGGTGAATGGTTTAATGCTGATCCTCAAGCAGTGCTACAACAAGCTCTTCAG 598
||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 541 ATACTCTTTGGTGAGTGGTTTAATGCTGATCCTCAAGCAGTGGTGCAACAAGCTCTTCAG 600
Query 599 ACGGGTGCAGGCCCAAATGCTTCTGATGCTCA-CCTCTTAATGGGCTTCCAGGTCCATTA 657
||||||||||| |||||||| ||||||||||| || |||||||||| ||||||||||||
Sbjct 601 ACGGGTGCAGGTCCAAATGCATCTGATGCTCATACTTTTAATGGGCTCCCAGGTCCATTA 660
Query 658 TACAATTGCTCTACAAAAGGTAAATACGTACAAACTGATGGTAAAACCTGGAAAGACGTA 717
|||||||||||||||||| | | || |||||||||||||| |||||||||||||||||
Sbjct 661 TACAATTGCTCTACAAAA-G---ACACATACAAACTGATGGTGAAACCTGGAAAGACGTA 716
Query 718 TCTACTACGATTAATCAATGCTGCACTCAATGACGAACTCTTCTTCACCATAGCCAATCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCTACTACGATTAATCAATGCTGCACTCAATGACGAACTCTTCTTCACCATAGCCAATCA 776
Query 778 TACATTGACGGTCGTAGAAGCGGATGCTTGCTACGTTAAACCATTCCAAACCAACACCGT 837
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 777 TACATTGACGGTCGTAGAAGCGGATGCTTGCTACGTTAAACCATTTCAAACCAACATCGT 836
Query 838 GCTTATCGGTCCGGGC-AAACAAACCAACGTACTACTCAAAACCAAACCTATTTATCCAA 896
|||| |||| |||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct 837 GCTTCTCGGCCCGGGCCAAACCA-CCAATGTACTACTCAAAACCAAACCTATTTATCCAA 895
Query 897 ATGCAACCTTTTACATGTTGGCAAGACCGTACTTTACGGGCCAAGGAACAATTGATAATA 956
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 896 ATGCAACCTTCTACATGTTGGCAAGACCGTACTTCACGGGCCAAGGAACAATTGATAATA 955
Query 957 CAACCGTTGCGGGAATTCTCCAATACCATCATCATTCCAAATCTTCTAAGAATCTTTCTA 1016
||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 956 CAACCGTCGCGGGAATTCTCCAATACCAACATCATACCAAGTCTTCTAAGAATCTTTCTA 1015
Query 1017 TTATTAAACCATCTCTCCCTCCCATCAATAGTACGAGCTACGCCGCAAATTTCACAAAAA 1076
| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1016 TCATTAAACCATCTCTCCCTCCCATCAATAGCACTAGCTACGCCGCAAATTTCACAAAGA 1075
Query 1077 TGTTTAGAAGTTTGGCAAGTTCTACATTTCCGGTAAACGCGCCAAAAACCGTGGACAAAA 1136
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 1076 TGTTTAGAAGTTTGGCAAGTTCTACATTTCCGGCAAACGTGCCAAAAGTCGTGGACAAAC 1135
Query 1137 AATATTTCTTTACCGTCGGTCTAGGAACCAACCCTTGTCCTAAAAACCAAACATGCCAAG 1196
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AATATTTCTTTGCCATCGGTTTAGGAACCAACCCTTGTCCTAAAAACCAAACATGCCAAG 1195
Query 1197 GACCAACTAATGCAACGAAATTTGCAGCATCTATCAACAATGTCTCTTTCATCTTACCAA 1256
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1196 GACCAACTAATACAACGAAATTTGCAGCATCTATCAACAACGTGTCTTTCATCTTACCAA 1255
Query 1257 ACAAGACTTCTCTATTACAATCATACTTCGTTGGCAAGTCCAACAATGTTTTCATGACCG 1316
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1256 ACAAGACTTCTCTATTACAATCATACTTCGTTGGCAAATCCAAGAATGTTTTCATGACCG 1315
Query 1317 ATTTCCCAACTGCCCCtttttttCCATTTAATTACACGGGGACGCCACCAAACAACACAA 1376
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1316 ATTTCCCAACTGCCCCTATTATTCCATTTAATTACACGGGTACGCCACCAAACAACACAA 1375
Query 1377 TGGTCTCAAGAGGGACCAAAGTTGTGGTCTTGAAGTACAACACAACTGTTGAATTGGTGT 1436
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1376 TGGTCTCAAGAGGGACCAAAGTTGTGGTCTTGAAGTACAAGACAACTGTTGAATTGGTGT 1435
Query 1437 TACAGGGCACTAGCATCTTGGGTATTGAGGCCCACCCTGTACATCTTCATGGCTTCAACT 1496
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1436 TACAGGGCACTAGCATCTTGGGTATTGAGGCCCACCCTATACATCTTCATGGCTTCAACT 1495
Query 1497 TTTATGTGGTGGGTCAAGGCTTCGGCAATTTTAACCCGGCCCGTGACCCAAAGCAATATA 1556
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1496 TTTATGTGGTGGGTCAAGGCTTTGGCAATTTTAACCCGGCCCGTGACCCAAAACATTATA 1555
Query 1557 ATCTAGTCGATCCGGTCGAACGAAACACCATCAATGTCCCTTCCGGTGGTTGGGTCGCCA 1616
| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1556 ACCTAGTCGATCCGGTCGAACGAAACACCATCAATATCCCTTCCGGTGGATGGGTCGCCA 1615
Query 1617 TCCGCTTCCTCGCCGATAATCCCGGTGTGTGGCTGATGCATTGCCACATTGAGATTCATT 1676
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TCCGCTTCCTTGCCGATAATCCCGGTGTGTGGCTGATGCATTGCCACATTGAGATTCATT 1675
Query 1677 TGAGTTGGGGTCTGACCATGGCTTGGGTGGTTTTGGACGGTGACCTTCCAAATCAGGAA- 1735
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1676 TGAGTTGGGGTCTGACCATGGCTTGGGTTGTTTTGGACGGTGACCTTCCAAATCAG-AAG 1734
Query 1736 CTCCTTCCTCCACCCTCAGATTTCCCTAAATGTTGACTCTGACCGATCCAACGCCTCTAC 1795
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1735 CTCCTTCCTCCACCCTCAGATTTCCCTAAATGTTGACTATGACCGATCCAACGCCTCTGC 1794
Query 1796 AAATGCCACATCACCTTTTTCCCTTTCTTGGAATGATATTTCCTTA-GTGCAATATATG- 1853
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1795 AAATGCCACATCACCTTTTTCCCTTTCTTGGAATGATATTTC-TGAAGTGCAATATATGT 1853
Query 1854 CT-TCT--C-TTTTG----C--CAtttttttttctttcctcttta-tacttttgtcatgt 1902
|| | | | |||| | |||||| ||| |||||||||||| ||||||||| ||
Sbjct 1854 CTCTTTTTCGTTTTTTTTTCTTCATTTTATTT-CTTTCCTCTTTAATACTTTTGT---GT 1909
Query 1903 tttgagatttctgagttttttttttt-ttt-cttttttttttttttttttttttttG--- 1957
|||||||||||||||||||||| | ||| ||| | ||| || | | ||
Sbjct 1910 TTTGAGATTTCTGAGTTTTTTTATCCCTTTGCTTGATGATTTGTTGTATAAAGAGTGAAC 1969
Query 1958 T-AAAAA-GA-G-T-G----A--A----CT-TGTACGATATTTTGACGCAAAATAAATAA 2001
| ||||| || | | | | | || |||||||||| ||||||||||||||||||
Sbjct 1970 TGAAAAACGATGGTCGCGTTAGTAATTTCTGTGTACGATATGTTGACGCAAAATAAATAA 2029
Query 2002 TTGTAAAGTTTTGTACTAATCGAAAAAGGCATTAGCA 2038
| ||||||||||||| ||| |||||||||||||||||
Sbjct 2030 TCGTAAAGTTTTGTAATAAACGAAAAAGGCATTAGCA 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101003496540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5