BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497203

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43070.1 | Symbols: WPP1 | WPP domain protein 1 | chr5:17289...   603    7e-172


> AT5G43070.1 | Symbols: WPP1 | WPP domain protein 1 | chr5:17289100-17289776 
REVERSE LENGTH=677
Length=677

 Score =  603 bits (326),  Expect = 7e-172
 Identities = 394/427 (92%), Gaps = 4/427 (1%)
 Strand=Plus/Plus

Query  29   AATGGCGGAAACCGAGACCGAGACGATCACCACCACATC-CACACCGCCGATCTCAGAAA  87
            |||||| |||||||| || ||| ||||||||||| | || | ||||||||||||||||||
Sbjct  50   AATGGCCGAAACCGAAACGGAGTCGATCACCACCTCTTCTC-CACCGCCGATCTCAGAAA  108

Query  88   CCGAAACCTCCACCACATTACCAACAATGGAAACGGAGAAGAATCCAAATCCAGTAACCA  147
            |||||| |||||||||||||||||||| ||| |||||||||||||| ||||| |||||||
Sbjct  109  CCGAAAACTCCACCACATTACCAACAACGGAGACGGAGAAGAATCCCAATCCGGTAACCA  168

Query  148  TTTCGCTCCGAATCTGGCCACCGACTCAAAAAACTCGCGACGCCGTCATTAACCGTCTGA  207
            |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  169  TTTCCCTCAGAATCTGGCCACCGACTCAAAAAACTCGCGACGCCGTGATTAACCGTCTGA  228

Query  208  TCGAAACACTATCAACCGAATCAATCCTCTCTAAGAGATTCGGAACTCTCGATTCCGAAG  267
            |||||||||| |||||||||||||||||||| |||||||||||| |||| || |||||||
Sbjct  229  TCGAAACACTGTCAACCGAATCAATCCTCTCCAAGAGATTCGGATCTCTTGAATCCGAAG  288

Query  268  AAGCTTCCTCCGTCGCGAAATCAATCGAAGACGAAGCTTACGCCGTCGCTTCCGCCGCCG  327
            |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct  289  AAGCTTCCTCCGTCGCGAAATCAATCGAAGACGAAGCTTACGCCATCGCTTCTGCCACCG  348

Query  328  TTGTT-AGTGAAGACGACGGGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAA  386
             | ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  349  -TATTCGGTGATGACGACGGGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAA  407

Query  387  CGTATGCTTGAATCTGTGAAAGCTAAGACTAATGTGGCTTCTCCTCCACCAAAGGATGGT  446
            ||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||
Sbjct  408  CGTATGCTTGAATCTGTTAAGGCTAAGAGTAATGTGGCTTCTCCTCCACCGAAGGATGGT  467

Query  447  GATGGAA  453
            |||||||
Sbjct  468  GATGGAA  474


 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  1   ACAAATTTCAAAATCCCTAAAAAGCTTT  28
           ||||||||||||||||||||||||||||
Sbjct  1   ACAAATTTCAAAATCCCTAAAAAGCTTT  28



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23710517384


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5