BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497208
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1609 0.0
> AT5G56980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant
structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G26130.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:23056080-23057742 REVERSE LENGTH=1663
Length=1663
Score = 1609 bits (871), Expect = 0.0
Identities = 1071/1166 (92%), Gaps = 19/1166 (2%)
Strand=Plus/Plus
Query 1 AAAAATGGAGTTACTAACGACCGTCGCGAGCTTTTTCACTCCGACGGCTCTCTTCCTCCT 60
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 26 AAAAATGGAGTTACTAACGACGGTCGCGAGCTTTTTCACTCCGACGACTCTTTTCCTCCT 85
Query 61 TCTCAATCTTATGATCGGCACAATCGTCGTAAGCTCTCGACTCGGGTCGGGTTCAAGAAA 120
||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 86 TCTTAATCTTATGATCGGTACAATCGTCGTAACCTCTCGACTCGGGTCAGGTTCAAGAAA 145
Query 121 ACATTACCAGCATCACGATGGGTTCTGGTCGGGTCATGCGCCGGCTCCGTTAGCTAGAGC 180
||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||
Sbjct 146 ACATTACCAGCATCACGATGGATTCGGGTCAGGTCATGCTCCGGCTCCGTTAGCTAGAGC 205
Query 181 TCCGTCGATTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCC 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TCCATCGATTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCC 265
Query 241 AGAAACTGAGCTTTTTTCGATGACGGCTCACCACGACGTAATCGGTTCGGATCTTCATGT 300
||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 266 AGAAACTGAGCTTTTCTCGATGACAGCTCACCACGACATAATCGGGTCGGATCTTCATGT 325
Query 301 ATACCCTGATCCGAATCCGGCTCCGTTACAACGCGCTCCTTCTCTCTTGGATCGGGTCAA 360
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 326 TTACCCGGATCCAAATCCGGCTCCGTTACAACGTGCTCCTTCTCTTTTGGATCGGGTCAA 385
Query 361 ATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 ATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTC 445
Query 421 ACACTC----TC--ACCTAGATCCACACCCGGATCCGGCTCCGGCTCCGTTACAACGTGC 474
||||| || |||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 446 CCACTCCCACTCCCACCTAGATTTACACCCGGATCCGGCTCCGGCACCGTTACAACGAGC 505
Query 475 TCCTTCTCTTCTGGATCGGGTCAAATCCATCGACATGTCATACTTCAAATTCCAGCAGTA 534
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 506 TCCTTCTCTTCTGGATCGGGTCAAATCCATCAACATGTCATACTTCAAATTCCAGCAGTA 565
Query 535 TAACCCGGAGGATAAAGACTATGCT-ATTCACAAAGAACCGACCCGTTTCGAAAATATTC 593
|||||||||||| || || |||||| || |||| |||||||||||| ||||||| |||||
Sbjct 566 TAACCCGGAGGAGAATGATTATGCTCAT-CACACAGAACCGACCCGATTCGAAAGTATTC 624
Query 594 CGACCCGGAAGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGGATCCCGGAGGAAG 653
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 625 CGACCCGGATGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGAATCCCGGAAGAAG 684
Query 654 ATCAACCGACTGGAACCGGAATCAATCA-TCCAATTGATCCACCCGGTTTAACTCGGGCT 712
||||||| || ||||||||| | || || || |||| | || |||||||||||||| |||
Sbjct 685 ATCAACCAACCGGAACCGGAGTGAA-CAGTCAAATTAACCCGCCCGGTTTAACTCGAGCT 743
Query 713 CCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCATCCTTTTACAGATCCGACCCG 772
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 744 CCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCCTCCTTCTACAGATCCGACCCG 803
Query 773 GAATTGGATCAAAA------TCCGGATCCGGTTCTTCACGAAGAGCACAAGCACGTAAGG 826
|| ||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
Sbjct 804 GATTTGGATCAAAAACAAAATCCGGATCCGGTTCTTCACGAGGAGCACAAGCATGTACGA 863
Query 827 AGCAAATCGGAATCGAAAAAACCGGTGAAGAAAAAGAAGAAAGCTTCAACGAAGATGACG 886
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 864 AGCAAATCGGAATCGAAAAAACCGGTGAAGAAGAAGAAGAAAGCTTTAACGAAGATGACA 923
Query 887 AAATCAGCGAGCGAGAAATCAGGTTTTGGTTTCACCGGAAGCCATGAGGAAGCAGCAG-A 945
||||| || |||||||||||||||||||||||| | |||||||||| |||||| || | |
Sbjct 924 AAATCGGCTAGCGAGAAATCAGGTTTTGGTTTCGCAGGAAGCCATGCGGAAGC-GCCGGA 982
Query 946 GACTGTGGAATCCGTCGAACGGAGAAGACCAGATACAACAAGAGTCGAGAGATCAACATC 1005
||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 983 GACGGTGGAATCCCTCGAACGGAGAAGACCAGATACAACGAGAGTCGAAAGATCGACGTC 1042
Query 1006 GTTCGGCGACGGCGAAGATGGCGTCGACGCAAAAGCTTCAGATTTCATCAACAAATTCAA 1065
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1043 TTTCGGCGACGGCGAAGATGGCGTCGACGCGAAAGCTTCAGATTTCATCAACAAATTCAA 1102
Query 1066 ACAACAGTTGAAACTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTCAAAGC 1125
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1103 ACAGCAGCTGAAATTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTTAAGGC 1162
Query 1126 CAATTGACGCCGTCTCCGTCGC-GGT 1150
| ||||| |||||||||||||| |||
Sbjct 1163 CCATTGAAGCCGTCTCCGTCGCCGGT 1188
Score = 215 bits (116), Expect = 1e-54
Identities = 158/177 (89%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 1284 TGCATTAGCGAAGTATGTGTGGCGTTAAAATTGGATCTGGGACGTTGTTTTGCGTCTGAA 1343
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1387 TGC-TTAGCGAAGTATGTGTGGCGTTAAAATTGGATCTAGGACGTTGTTTTGCGTCTTAA 1445
Query 1344 TTATATATAATGTTACATTCATTCACTTGGCTATTTTTTCGAGATGTTTAGTACACGTTT 1403
|| || || || |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1446 TTCTA-ATGAT----CATTCATTCACTTGGCAATTTTTTCGAGATGTTTGGTACACGTTT 1500
Query 1404 CCTAGATTCTGCCCTATTTTCAGGTTGTTTTATTTTATCTTATT-AAACTTTTCTAG 1459
|||| ||||||||||||||||||||| |||||| ||| ||||| ||| ||||||||
Sbjct 1501 CCTATTTTCTGCCCTATTTTCAGGTTGGTTTATTCTAT-TTATTTAAAATTTTCTAG 1556
Score = 154 bits (83), Expect = 2e-36
Identities = 120/137 (88%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 1144 TCGCGGTTTTGTTTGCCGCCGTTTTTCACAGAGGAGAGAGTACAGGAGTAGAGAATGTCT 1203
||||||||||||||||||||||||||||| | || ||| |||||||| || | | |||
Sbjct 1218 TCGCGGTTTTGTTTGCCGCCGTTTTTCAC---GTAG-GAG-ACAGGAGTGGACATTATCT 1272
Query 1204 GAATTACCGATAGTGCCCCTGTATG-TTGAGGATATTTAAGTAATTTATCAATTTGTTAA 1262
|||||||||||| | ||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1273 GAATTACCGATAATATCCCTGTATGTTTGAGGATATTTAAGTAATTTATTAATTAGTTAA 1332
Query 1263 TGTGAATTTATTATTGT 1279
||||||||| |||||||
Sbjct 1333 TGTGAATTTGTTATTGT 1349
Score = 111 bits (60), Expect = 1e-23
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 441 ACCCGGATCCGGCTCCGGCTCCGTTACAACGTGCTCCTTCTCTTCTGGATCGGGTCAAAT 500
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 328 ACCCGGATCCAAATCCGGCTCCGTTACAACGTGCTCCTTCTCTTTTGGATCGGGTCAAAT 387
Query 501 CCATCGACATGTCATACTTCAAATTCC 527
| ||| ||||||| || ||||| ||||
Sbjct 388 CTATCAACATGTCTTATTTCAAGTTCC 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5