BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497209
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 372 4e-102
> AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15195653-15197264 FORWARD LENGTH=1612
Length=1612
Score = 372 bits (201), Expect = 4e-102
Identities = 264/293 (90%), Gaps = 10/293 (3%)
Strand=Plus/Plus
Query 710 CAAAGGATTTGAAACCGATGAGACAACATACCATGTTTTTGGTTTCGGGATTCACAAAAG 769
|||||||| |||| ||||||||||||| ||||||| ||||||||||||| ||||| ||||
Sbjct 1303 CAAAGGATATGAACCCGATGAGACAACGTACCATG-TTTTGGTTTCGGGGTTCACGAAAG 1361
Query 770 AAGGGAGAAGAAAGGAAAGAGAAGTTATAGTGAACGAGATGTGGGATAAAGATATGCTGC 829
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1362 AAGGGAGAAGAAAGGAAGGAGAAGTTCTAGTGAACGAGATGTTGGATAAAGATATGTTGC 1421
Query 830 CTGATATCTTTACATATAATAGATTGATGGATAGCTTGTCCTGCATTGGAAAATTCTGCA 889
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 1422 CTGATATCTTTACATATAATAGATTGATGGATGGCTTGTCCTGCACTGGAAAATTCT-CA 1480
Query 890 TTGAAGCGAGTCCGGATGT-GT-----GT-TT-GATCTGTGTAAACTAGACACAAGCTAT 941
||| | ||||||||||| || || || |||||||||||||||||| ||||||||
Sbjct 1481 AGGAAACAAGTCCGGATGTTGTAACCTGTGTTTGATCTGTGTAAACTAGACCCAAGCTAT 1540
Query 942 ATCTATGTATCAACAGGTTTTATTTTGAAGATATGAAATGGAAACCAAGTTGG 994
||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1541 ATCTATGTATCAACAAATTTTATTTTGAACATATGAAATGGAAACCAAGTTGG 1593
Score = 303 bits (164), Expect = 2e-81
Identities = 275/323 (85%), Gaps = 30/323 (9%)
Strand=Plus/Plus
Query 18 CAATTTCCTCGAGAACAATCTCCCTCACCACCAAACCCTAACTCCACAAACTCTCCTCGG 77
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct 190 CAATTTCCTCGAGAACAATCTCCCTCACCATCAAACACTAACGCCACAAACTCTTCTTGG 249
Query 78 ATTCCTCCGTTCGAAGCTCCGTCACCAGCCGCTCTACGCTCATTATGTCTTGGCCGTCTT 137
|||||||||||| ||| ||||| |||| ||||||||||||||||||| ||| ||||||||
Sbjct 250 ATTCCTCCGTTCCAAGATCCGTAACCATCCGCTCTACGCTCATTATGACTTCGCCGTCTT 309
Query 138 CAATTGGGCAGCTAC----G-C--T--C----ATGATCACGATTCTTTCCTCTGGATGTC 184
|||||||||||||| | | | | ||||||||||||||||||||||||||||
Sbjct 310 TAATTGGGCAGCTACACTCGACACTTTCCGTCATGATCACGATTCTTTCCTCTGGATGTC 369
Query 185 GAGACCACTCGCCGCCAGGCACCGGTTTGACGATCTTTATC-T-T-CT-TCT-------C 233
|||| |||||||||||| ||||||||||||||||||||||| | | || ||| |
Sbjct 370 GAGATCACTCGCCGCCACGCACCGGTTTGACGATCTTTATCGTCTTCTCTCTTTTGTAGC 429
Query 234 --C----CCATGTCCTTGTTCCTCAGGTATCTTCTCTTGTCCACAGCTCGAACCTATTTT 287
| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 430 TGCGAATCCATGTCCTTGTTCCTCAGGTATATTCTCTTGTCCAGAGCTTGAACCTATTTT 489
Query 288 CCGATCTGCCATTGATGCGTATT 310
|||||| ||||||||||||||||
Sbjct 490 CCGATCCGCCATTGATGCGTATT 512
Score = 255 bits (138), Expect = 4e-67
Identities = 160/171 (94%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 536 AAAACAAGGCGGATCGAGAAATGGAGATGGTGGAGGAGCTGTGGAAGAAAGGCCAAACCC 595
|||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1047 AAAACAAGGCGGTTAGAGCAATGGAGATGATGGAGGAGCTGTGGAAGAAAGGCCAAACCC 1106
Query 596 CATGTTTCATTGCTTGTACTACACTCGTCCAAGGGTTGAGGAAATCAGAAAGAATAGAGA 655
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 1107 CATGTTTCATTGCTTGTACTACACTCGTCGAAGGGTTGAGGAAATCAGGAAGAACAGAGA 1166
Query 656 AAGCATCAGGCTTTATGGAGAAGATGATGAATGCAGGAATCCTTCGCGATA 706
|||| ||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 1167 AAGCGTCAGGGTTTATGGAGAAGATGATGAATGCAGGAATTCTTCCCGATA 1217
Score = 233 bits (126), Expect = 2e-60
Identities = 155/169 (92%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 311 ATATGGATAAGGCTTTAAGGTTTTACCAGAGGATGGGGAAA-GAAAGGGCAAAGCCAGAT 369
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 633 ATATGGATAAGGCTTTAAGGTTTTACCAGAGGAT-GGGAAAGGAAAGAGCAAAGCCAGAT 691
Query 370 GTATGCACGTTTAACACCCTCATCAATGGCTACTGCAGGAGCTTTAAGTTTGATTTGGCA 429
|||||||||||||||| ||||||||||| || || || |||| ||||||||||||||||
Sbjct 692 GTATGCACGTTTAACATTCTCATCAATGGTTATTGTAGAAGCTCTAAGTTTGATTTGGCA 751
Query 430 TTGGATTTGTTCAGGGAGATGAAGGAGCAAGGCTGTGAACCAAATCTGG 478
||||||||||||||||||||||||||| |||| |||||||| ||| |||
Sbjct 752 TTGGATTTGTTCAGGGAGATGAAGGAGAAAGGTTGTGAACCGAATGTGG 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5