BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497212

Length=1161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30120.2 | Symbols:  | unknown protein; EXPRESSED IN: 22 pla...   824    0.0  


> AT2G30120.2 | Symbols:  | unknown protein; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G14750.1); 
Has 2527 Blast hits to 2101 proteins in 358 species: 
Archae - 77; Bacteria - 245; Metazoa - 1087; Fungi - 215; 
Plants - 350; Viruses - 4; Other Eukaryotes - 549 (source: 
NCBI BLink). | chr2:12860541-12861910 REVERSE LENGTH=981
Length=981

 Score =  824 bits (446),  Expect = 0.0
 Identities = 513/546 (94%), Gaps = 2/546 (0%)
 Strand=Plus/Plus

Query  1    ATCGGAGATCGGAAACTATGGCCGGACGAGACCGTTATCTTCCATCGTCGGCAGTTTCAA  60
            ||||||||||| ||||||||||||||||||| |||||| ||||||| || ||||||||||
Sbjct  32   ATCGGAGATCGCAAACTATGGCCGGACGAGATCGTTATATTCCATCATCAGCAGTTTCAA  91

Query  61   CTTCATCATCTTCAAGATTAGTAGAATCTCAATTAATCGAATCCGATCGAAATCGAGCTC  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  92   CTTCATCATCTTCAAGATTATTAGAATCTCAATTAATCGAATCCGATCGAAATCGAGCTC  151

Query  121  GATCTGTAATCCTCGAGGATCGAATCGCAATTCAACACCGTGAAATCCAATCTCTTCTCA  180
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  152  GATCTGTAATCCTCGAGGATCGAATCGCAATCCAACACCGTGAAATCCAATCTCTTCTCA  211

Query  181  ACGATAACCAACGATTAGCTGTGGCACACATTGGAGTCAAAGACCAGCTCAATTTAGCCA  240
            |||| || |||||||||||||| |||||||| ||| ||||||||||||||||| |||| |
Sbjct  212  ACGACAATCAACGATTAGCTGTAGCACACATCGGACTCAAAGACCAGCTCAATGTAGCTA  271

Query  241  AGCGTGAGCTCGAACGGTTACTTGAAACCGCTGCTAAAGTTAAAGCGGAAGGAGAAGCTA  300
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  272  AGCGTGAGCTCGAACGGTTACTTGAAACCGCTGTTAAAGTTAAAGCGGAAGGAGAAGCTA  331

Query  301  AGGTGCGAGAGGTTTATCAGAATGCGTTGAGGATGGAGGCGGAGGCTCGTGTGATTGATG  360
            | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  332  AAGTGCGTGAGGTTTATCAGAATGCGTTGAGAATGGAGGCGGAGGCTCGTGTGATTGATG  391

Query  361  GACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATGTACAGAGGTTAGCTAATGATAGAC  420
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  392  GACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATGTACAGAGGTTAGGTAGTGATAGAC  451

Query  421  AGGAGTTAGCTACGGAGTTGGCTATGCTTGATGGTGAGATGGTTAAAGCGAAACCGAATT  480
            |||||||||||||||| ||||||||| |||||| |||||||| ||| || ||||||||||
Sbjct  452  AGGAGTTAGCTACGGAATTGGCTATGTTTGATGATGAGATGGCTAAGGCTAAACCGAATT  511

Query  481  CGGATCGAGCCATTGAGGTTAAGGCGGAGATTGAGATTCTTAGAGGAGA-AGTTCGTAAA  539
            |||||||||| |||||||||||   |||||||||||||||| ||||||| | ||||||||
Sbjct  512  CGGATCGAGCTATTGAGGTTAAATTGGAGATTGAGATTCTTCGAGGAGAGA-TTCGTAAA  570

Query  540  GGAAGG  545
            ||||||
Sbjct  571  GGAAGG  576


 Score =  315 bits (170),  Expect = 8e-85
 Identities = 194/206 (94%), Gaps = 0/206 (0%)
 Strand=Plus/Plus

Query  687  AGGGCTGCTCTTGAGCTTGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAACGCGGT  746
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  574  AGGGCTGCTCTTGAGCTGGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAGCGCGGT  633

Query  747  ATGGAGAAGACTATCGATCACTTGAATCGTGAGATTGTGAAACTTCAGGCAGAATTGGTT  806
            |||||||||||||||||||| |||||||| |||||||| |||||| ||| ||||||||||
Sbjct  634  ATGGAGAAGACTATCGATCATTTGAATCGAGAGATTGTAAAACTTGAGGAAGAATTGGTT  693

Query  807  AATCTGGAGACCAAAGCTAGAGAAGCAAATGCAGATGCTGAGGCAGCTCCAAACCCAAGC  866
             |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| 
Sbjct  694  GATCTGGAGACTAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGCAGCTCCAACCCCAAGT  753

Query  867  CCTGGATTGGCTGCAAGTTATGGAAA  892
            ||||||||||||||||||||||||||
Sbjct  754  CCTGGATTGGCTGCAAGTTATGGAAA  779


 Score =  135 bits (73),  Expect = 7e-31
 Identities = 81/85 (95%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  1077  TAGTAAGTGTCCAACTTGTAGAAGTATCCGTTGGTTAGTGAGAATTGTTGTAAACTCATA  1136
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  878   TAGTAAGTGTCCAACTTGTACAAGTATCCGTTGGTTAGTGAGAATTGTTGTAAACTCATA  937

Query  1137  ATGGATTGAATTCAAAGCTTATGAT  1161
             || || ||||||||| |||||||||
Sbjct  938   ATTGACTGAATTCAACGCTTATGAT  962



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56977618575


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5