BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497212 Length=1161 Score E Sequences producing significant alignments: (Bits) Value AT2G30120.2 | Symbols: | unknown protein; EXPRESSED IN: 22 pla... 824 0.0 > AT2G30120.2 | Symbols: | unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 2527 Blast hits to 2101 proteins in 358 species: Archae - 77; Bacteria - 245; Metazoa - 1087; Fungi - 215; Plants - 350; Viruses - 4; Other Eukaryotes - 549 (source: NCBI BLink). | chr2:12860541-12861910 REVERSE LENGTH=981 Length=981 Score = 824 bits (446), Expect = 0.0 Identities = 513/546 (94%), Gaps = 2/546 (0%) Strand=Plus/Plus Query 1 ATCGGAGATCGGAAACTATGGCCGGACGAGACCGTTATCTTCCATCGTCGGCAGTTTCAA 60 ||||||||||| ||||||||||||||||||| |||||| ||||||| || |||||||||| Sbjct 32 ATCGGAGATCGCAAACTATGGCCGGACGAGATCGTTATATTCCATCATCAGCAGTTTCAA 91 Query 61 CTTCATCATCTTCAAGATTAGTAGAATCTCAATTAATCGAATCCGATCGAAATCGAGCTC 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 92 CTTCATCATCTTCAAGATTATTAGAATCTCAATTAATCGAATCCGATCGAAATCGAGCTC 151 Query 121 GATCTGTAATCCTCGAGGATCGAATCGCAATTCAACACCGTGAAATCCAATCTCTTCTCA 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 152 GATCTGTAATCCTCGAGGATCGAATCGCAATCCAACACCGTGAAATCCAATCTCTTCTCA 211 Query 181 ACGATAACCAACGATTAGCTGTGGCACACATTGGAGTCAAAGACCAGCTCAATTTAGCCA 240 |||| || |||||||||||||| |||||||| ||| ||||||||||||||||| |||| | Sbjct 212 ACGACAATCAACGATTAGCTGTAGCACACATCGGACTCAAAGACCAGCTCAATGTAGCTA 271 Query 241 AGCGTGAGCTCGAACGGTTACTTGAAACCGCTGCTAAAGTTAAAGCGGAAGGAGAAGCTA 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 272 AGCGTGAGCTCGAACGGTTACTTGAAACCGCTGTTAAAGTTAAAGCGGAAGGAGAAGCTA 331 Query 301 AGGTGCGAGAGGTTTATCAGAATGCGTTGAGGATGGAGGCGGAGGCTCGTGTGATTGATG 360 | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 332 AAGTGCGTGAGGTTTATCAGAATGCGTTGAGAATGGAGGCGGAGGCTCGTGTGATTGATG 391 Query 361 GACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATGTACAGAGGTTAGCTAATGATAGAC 420 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 392 GACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATGTACAGAGGTTAGGTAGTGATAGAC 451 Query 421 AGGAGTTAGCTACGGAGTTGGCTATGCTTGATGGTGAGATGGTTAAAGCGAAACCGAATT 480 |||||||||||||||| ||||||||| |||||| |||||||| ||| || |||||||||| Sbjct 452 AGGAGTTAGCTACGGAATTGGCTATGTTTGATGATGAGATGGCTAAGGCTAAACCGAATT 511 Query 481 CGGATCGAGCCATTGAGGTTAAGGCGGAGATTGAGATTCTTAGAGGAGA-AGTTCGTAAA 539 |||||||||| ||||||||||| |||||||||||||||| ||||||| | |||||||| Sbjct 512 CGGATCGAGCTATTGAGGTTAAATTGGAGATTGAGATTCTTCGAGGAGAGA-TTCGTAAA 570 Query 540 GGAAGG 545 |||||| Sbjct 571 GGAAGG 576 Score = 315 bits (170), Expect = 8e-85 Identities = 194/206 (94%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 687 AGGGCTGCTCTTGAGCTTGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAACGCGGT 746 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 574 AGGGCTGCTCTTGAGCTGGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAGCGCGGT 633 Query 747 ATGGAGAAGACTATCGATCACTTGAATCGTGAGATTGTGAAACTTCAGGCAGAATTGGTT 806 |||||||||||||||||||| |||||||| |||||||| |||||| ||| |||||||||| Sbjct 634 ATGGAGAAGACTATCGATCATTTGAATCGAGAGATTGTAAAACTTGAGGAAGAATTGGTT 693 Query 807 AATCTGGAGACCAAAGCTAGAGAAGCAAATGCAGATGCTGAGGCAGCTCCAAACCCAAGC 866 |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 694 GATCTGGAGACTAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGCAGCTCCAACCCCAAGT 753 Query 867 CCTGGATTGGCTGCAAGTTATGGAAA 892 |||||||||||||||||||||||||| Sbjct 754 CCTGGATTGGCTGCAAGTTATGGAAA 779 Score = 135 bits (73), Expect = 7e-31 Identities = 81/85 (95%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1077 TAGTAAGTGTCCAACTTGTAGAAGTATCCGTTGGTTAGTGAGAATTGTTGTAAACTCATA 1136 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 878 TAGTAAGTGTCCAACTTGTACAAGTATCCGTTGGTTAGTGAGAATTGTTGTAAACTCATA 937 Query 1137 ATGGATTGAATTCAAAGCTTATGAT 1161 || || ||||||||| ||||||||| Sbjct 938 ATTGACTGAATTCAACGCTTATGAT 962 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56977618575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5