BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497217
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28667.1 | Symbols: | pseudogene, hypothetical protein | ch... 1308 0.0
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 1110 0.0
AT4G05526.1 | Symbols: | transposable element gene | chr4:2811... 490 1e-137
AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 381 7e-105
AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 357 1e-97
AT1G43723.1 | Symbols: | transposable element gene | chr1:1649... 291 1e-77
> AT5G28667.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10690062-10691087 FORWARD LENGTH=1026
Length=1026
Score = 1308 bits (708), Expect = 0.0
Identities = 891/979 (91%), Gaps = 14/979 (1%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACAAAATGGAAACAAGTTATGGATTAC 60
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 10 GAATGTCTCTTGATTGTTTTAGATCAATATGTGACATAATGGAAACAAGTTATGGATTAC 69
Query 61 AACCTACATTGATTGTTAGCATTGAAGAGAGTGTCGCCATGTTTTTACGGATATGTGGAC 120
|||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 70 AACCTACATTGAATGTTAGCATTGAAGAGTGTGTTGCCATGTTTTTACGGATATGTGGAT 129
Query 121 ACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTTTTGAAGTCCTTAGAGCAACAAAGT 180
||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 130 ACAATGAAGGTCAAAGAGATGTTGGGTTGCGATTTTTTGAAGGCCTTAGAGTGACAAAGT 189
Query 181 TACTTACTTGTGATTATATCAAGACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAA 240
||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 190 TACTTGCTTGTGATTGTATCAAGACGCCAACAACACAAGAACTACGTCGAATTCATGAAA 249
Query 241 AACTGCAAATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGATG 300
|| | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 250 AAGTACAAATGGATCGAAGATATTGGTCATATTTTAGTG-ATTTGTTGGAGCTATAGATG 308
Query 301 GAGTTCATGTATGTGTTAAGGTGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACG 360
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 309 GAGTTCATGT--GTGTTAAGGTGAAGCCTAAACTACAAGGAATGTATTGGAATTGACACG 366
Query 361 ATAGAACATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTT 420
|||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 367 ATAGAACATCATTTAATATCATGGCCGTATGTGATATAAATATGTTGTTTTCATATGTTT 426
Query 421 GGAACGGAGCACCTGGATCATGTCACGATACAGCAGTTCTAACGATGGCACAAGATAATG 480
| || |||||| |||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 427 GAAATAGAGCACATGGATCGTGTCACGATACAGTAGTTCTAACGATGGTACAAGATAATG 486
Query 481 ATTATGAATTTCCTTTGCCTC-TGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCA 539
||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||
Sbjct 487 ATTATGAATTTCCTTTGCCTCCT-AGACACAAGTATTATGTAGTTGATTTTGGGTATCCA 545
Query 540 AATAAACAAAGCTTTTTGGCACCTTATAGATCTTCGCGGAACGGGGTTGTTATGTATCAC 599
||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 546 AATAAACAAGGCTTTTTGGCACCTTATAGATCTTCGCGGAACAGAGTTGTTAAGTATCAC 605
Query 600 ATGTCACAGTTCTACAATGGTCCTCCTCCAAGAAATAAACAAGAGTTGTTTAATCGATGC 659
||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||
Sbjct 606 ATGTCACAGTTCTACAATGTTCCTTCTCTTAGGAATAAACAAGAGTTGTTTAATCGATGT 665
Query 660 CATGCATCTCTACGTTCTGTTATTGAAAGAACATTTGGAGTTTGGAAGAAAAAATGGAGG 719
||||||| | | | |||||||| ||| |||||||||| |||||||||||||||
Sbjct 666 CATGCATGAAAAA-T-CA---ATTGAAAGGACAATTGGAGTTTGAAAGAAAAAATGGAGG 720
Query 720 ATTCTAAGTGATTTTCCCAGATATGATATTGATGTTaaaaaaaGAGTGGTAATGGCTACA 779
||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 721 ATTCTTTGTGAATTTCCCAGATATGATATTGATGTTCAAAAAAGAGTGGTAACAATTACA 780
Query 780 ATGGGACTACATAATTTTATCAGAATTTCGAATTATTTTGACGAAGA-TTTTGTTGAAGT 838
||||||||| ||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 781 ATGGGACTATATAATTTTATCAGGATTTCGAATTATTTTGACGA-GAATTTTGATGAAG- 838
Query 839 GA-TGGGAGATACAAATATCAACAACGTAAATTCTGAGAATGATCTAGATGACATGGAGA 897
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAATGAGAAATACAAATATCAACAACGTAAATTCTGAGAATGATCTAGATGACATGGAGA 898
Query 898 GTGATGGTATACCTGATGGAAATCATATGGCAAATATAAGAGAAAATATTGCAGATATGT 957
| | |||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||
Sbjct 899 GAGGTGGTATACCTGATGAAAATTATATGGCAAATATAAGAAAAAATATTGTTGATATGT 958
Query 958 TATGGGCAAATCAAAATAC 976
||||||||| |||||||||
Sbjct 959 TATGGGCAACTCAAAATAC 977
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 1110 bits (601), Expect = 0.0
Identities = 756/829 (91%), Gaps = 17/829 (2%)
Strand=Plus/Plus
Query 152 ATTTTTTGAAGTCCTTAGAGCAACAAAGTTACTTACTTGTGATTATATCAAGACTCCAAC 211
||||||||||||||||||||| ||| || ||||| |||||||||||||||| || |||||
Sbjct 409 ATTTTTTGAAGTCCTTAGAGCGACATAGATACTTGCTTGTGATTATATCAAAACGCCAAC 468
Query 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAA-GATATTGGCCAT 270
|| ||||||||||||||||||||||||| |||| ||||||||| || ||||||| |||
Sbjct 469 AACACAAGAACTACGTCGAATTCCTGAATAACTATAAATGGATC-AACAATATTGGTCAT 527
Query 271 ATTTTAGTGGATTTGTTGGAGCTATAGATGGAGTTCATGTATGTGTTAAGGTGAAGCCTG 330
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct 528 ATTTTAGTGGATTTGTTGGAGGTATAAATGGAGTTCATGTATGTGTTAAGGTGAAGCATT 587
Query 331 AACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATAT 390
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 588 AACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCAAGGCCATAT 647
Query 391 GTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTGGATCATGTCACGATA 450
|||||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||
Sbjct 648 GTGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACTTGGATCGTGCCACGATA 707
Query 451 CAGCAGTTCTAACGATGGCACAAGATAATGATTATGAATTTCCTTTGCCT-CTGAGAGAC 509
||| ||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 708 CAGTAGTTCTAACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCT-AGAGAT 766
Query 510 AAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAAGCTTTTTGGCACCTTATAGA 569
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 767 AAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCATCTTATCGA 826
Query 570 TCTTCGCGGAACGGGGTTGTTATGTATCACATGTCACAGTTCTACAATGGTCCTCCTCCA 629
|||||||||||| | ||| || |||||||||||||||| ||||||||||||||||||
Sbjct 827 TCTTCGCGGAACAGAGTT-TTCGGTATCACATGTCACAGCTCTACAATGGTCCTCCTCTT 885
Query 630 AGAAATAAACAAGAGTTGTTTAATCGATGCCATGCATCTCTACGTTCTGTTATTGAAAG- 688
||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 886 AGAAATAAACATGAGTTGTTTAATCGATGTCATGCATCTTTACGTTCTGTTATTGAAAGG 945
Query 689 AACATTTGGAGTTTGGAAGAAAAAATGGAGGATTCTA-AGTGA-TTTTCCCAGATATGAT 746
|| ||| ||||||||||||||||||||||||||||| | ||| ||||| |||||||||
Sbjct 946 AAAATT-GGAGTTTGGAAGAAAAAATGGAGGATTCTTTA-TGAATTTTCT-AGATATGAT 1002
Query 747 ATTGATGTTaaaaaaaGAGTGGTAATGGCTACAATGGGACTACATAATTTTATCAGAATT 806
|||||||| |||||| |||||||| | |||||||| |||||||||| |||||||||||
Sbjct 1003 ATTGATGTCCAAAAAACAGTGGTAACGACTACAATGTGACTACATAACTTTATCAGAATG 1062
Query 807 TCGAATTATTTTGACGAAGA-TTTTGTTGAAGTGATGGGAGATACAAATATCAACAACGT 865
||||||||||||||||| || |||||||||||| || ||||||||||||||||||||| |
Sbjct 1063 TCGAATTATTTTGACGA-GAATTTTGTTGAAGTAATAGGAGATACAAATATCAACAACAT 1121
Query 866 AAATTCTGAGAATGATCTAGATGACATGGAGAGT-GATGGTATACCTGATGGAAATCATA 924
||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||
Sbjct 1122 AAATTCTGAGAATGATCTAGATGACC-GAAGAGAAG-TGGTATACCTGATGGAAATCATA 1179
Query 925 TGGCAAA-TATAAGAGAAAATATTGCAGATATGTTATGGGCAAATCAAA 972
||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1180 TGGCAAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1228
Score = 237 bits (128), Expect = 2e-61
Identities = 147/156 (94%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACAAAATGGAAACAAGTTATGGATTAC 60
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 225 GAATGTCTCTGGATTGTTTTAGATCATTATGTGACATAATGGAAACAAGTTATGGATTA- 283
Query 61 A-ACCTACATTGATTGTTAGCATTGAAGAGAGTGTCGCCATGTTTTTACGGATATGTGGA 119
| |||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 284 ATTCCTACAATGAATGTTAGTATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGA 343
Query 120 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 155
||||||||||||||||||||||||||||||||||||
Sbjct 344 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 379
> AT4G05526.1 | Symbols: | transposable element gene | chr4:2811266-2814539
FORWARD LENGTH=3274
Length=3274
Score = 490 bits (265), Expect = 1e-137
Identities = 662/844 (78%), Gaps = 65/844 (8%)
Strand=Plus/Plus
Query 159 GAAGTCCTTA-GAGCAAC-AAAGTTACTTA-CTTGTGATTATATCAAG-ACTCCAACAAG 214
||||| |||| | ||||| || |||| || | ||||||||||| || ||||||| ||
Sbjct 2420 GAAGTTCTTACG-GCAACTGAA-TTAC-TAGCATGTGATTATAT-TAGAACTCCAAAAAC 2475
Query 215 ACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAAGATATTGGCCATATTT 274
||||| |||| ||||| || ||| | ||| ||| | ||||||||| |||| ||||||||
Sbjct 2476 TCAAGATCTACATCGAAATCTTGAGATACTTCAAGTAGATCGAAGAAATTGACCATATTT 2535
Query 275 TAGTGGATTTGTTGGAGCTATAGATGG-AGTTCATGTATGTGTTAAG--GTGAAGCCTGA 331
||||||||||||||||||||| ||||| | || |||| ||||| || |||||||||||
Sbjct 2536 TAGTGGATTTGTTGGAGCTATGGATGGGACTT-ATGTTTGTGTAAAAAAGTGAAGCCTGA 2594
Query 332 ACTACAAGGAATGTATTGGAATCGACACGATAGAA-CATCGTTT-AATATCATGGCAATA 389
| |||||||||| ||||||||||||||||||| | |||| ||| || ||||||||||||
Sbjct 2595 ATTACAAGGAATATATTGGAATCGACACGATA-ATGCATC-TTTGAACATCATGGCAATA 2652
Query 390 TGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTG-GATCATGTCACGA 448
|||||| | |||||||| || |||||| ||||||| |||||||| | |||||||||||||
Sbjct 2653 TGTGATTTGAATATGTTCTTCACATATATTTGGAATGGAGCACC-GAGATCATGTCACGA 2711
Query 449 TACAGCAGTTCTAACGATGGCACAA-GATAATGATTATGAATTTCCTTTGCCTCTGAGAG 507
| | | |||||||| ||||||||| || | ||||| ||| ||||| ||||||| | ||
Sbjct 2712 CAAATCTGTTCTAACAATGGCACAACGA-AGTGATTCTGATTTTCCCTTGCCTCCGCTAG 2770
Query 508 ACAAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACA--AAGCTTTTTGGCACCTTA 565
| ||||| || || ||||||||||| |||||||| ||| || |||||||| |||||
Sbjct 2771 AAAAGTACTACGTCGTTGATTCTGGCTATCCAAACGGACATGAA--TTTTTGGCTCCTTA 2828
Query 566 TAGATCTTCGCGGAACGG-GG--TTGTTATGTATCACATGTCACAGTTCTACAATGGTCC 622
||||| || | | || || |||| | |||||| ||||| |||||||| ||| ||
Sbjct 2829 CAGATCATCAAG-A--GGTGGAATTGTGAGGTATCATATGTCGCAGTTCTATTCTGGACC 2885
Query 623 TCCTCCAAGAAATAAACAAGAGTTGTTTAATCGATGCCATGCATC-TCTACGTTCTGTTA 681
||||||||||||||| |||| || ||||||||||| |||| || | ||||||| || |
Sbjct 2886 ACCTCCAAGAAATAAAAAAGAATTATTTAATCGATGTCATGTGTCAT-TACGTTCAGTAA 2944
Query 682 TTGAAAGAACATTTGGAGTTTGGAAGAAAAAATGGAGGATTCTAAGTGATTTTCCCA-GA 740
| || ||||| ||||||||||||||||| ||||||| ||||| ||||||| |||| ||
Sbjct 2945 TCGAGAGAACTTTTGGAGTTTGGAAGAAGAAATGGATAATTCTTTGTGATTT-CCCAAGA 3003
Query 741 TAT-GATATTGATGTTaaaaaa-aGAGTGGTAATGGCTACAATGGGACTACATAATTTTA 798
||| | |||| | || | |||| ||| |||||||| ||||||||||| |||| ||||||
Sbjct 3004 TATAG-TATTCAAGT-ACAAAAGAGAATGGTAATGACTACAATGGGATTACACAATTTTT 3061
Query 799 TCAGAATTTCGAATTATTTTGACGAAGATTTTGTTGAAGTGATGGGAGATACAAATATCA 858
||| |||||| |||| |||| | |||| | || | | | || || || | | |
Sbjct 3062 TCAAAATTTCAAATT-TTTT-A-GAAG-TAATGAC-A-G--A-GGC---TAGAA-T-T-A 3106
Query 859 ACAACGTA-A-ATTCTGAGAATGATCTAGATGACATGGAGAGTGA-TGGTA-TACCTGAT 914
|||| || | ||| ||| ||| || |||| ||||| || | || | || | |||
Sbjct 3107 ACAA--TACAGATTGGGAGCCTGAAATAAATGATATGGA-AGCAAATGA-AGTAGCAGAT 3162
Query 915 GGA-AATCATATGGCA-AATATAAGAGAAAATATTGCAGATATGTTATGGGCAAATCAAA 972
||| ||| |||| || || |||||||| ||||||||||||||||| ||||||||| |||
Sbjct 3163 GGAGAATT-TATGACACAA-ATAAGAGACAATATTGCAGATATGTTGTGGGCAAATAAAA 3220
Query 973 ATAC 976
||||
Sbjct 3221 ATAC 3224
> AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:15803993-15806948 FORWARD
LENGTH=2956
Length=2956
Score = 381 bits (206), Expect = 7e-105
Identities = 421/524 (80%), Gaps = 18/524 (3%)
Strand=Plus/Plus
Query 189 TGTGATTATATCAAG-ACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAAAACTGCA 247
||||||||||| || ||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 2441 TGTGATTATAT-TAGAACTCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCA 2499
Query 248 AATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGATGG-AGTTC 306
| | || ||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 2500 AGTAGACCGAAGATATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGGACA-C 2558
Query 307 ATGTATGTGTTAAGGTGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACGATAGAA 366
|||| || || || || |||||||| |||| ||||||||||||||||||||||||| |
Sbjct 2559 ATGTGTGCGTAAAAGTAAAGCCTGAGTTACAGGGAATGTATTGGAATCGACACGATA-AT 2617
Query 367 -CATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAAC 425
|||| || || |||||||||||||||||| | |||||||| || |||||| | |||||
Sbjct 2618 GCATCCTTGAACATCATGGCAATATGTGATTTGAATATGTTATTCACATATATCTGGAAT 2677
Query 426 GGAGCACCTGGATCATGTCACGATACAGCAGTTCTAACGA-TGGCACAAGATAA-TGATT 483
|||| ||| || || || |||||||||| ||||| | | | |||||| | || |||||
Sbjct 2678 GGAGTACCAGGTTCTTGCCACGATACAGTTGTTCTG-CAAATAGCACAACA-AAGTGATT 2735
Query 484 ATGAATTTCCTTTGCCTCTGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAAATA 543
|| ||||||||||||| | ||| ||||||||| | ||||||||| | || ||||| |
Sbjct 2736 CCGAGTTTCCTTTGCCTCCGTCAGAGAAGTATTATCTGGTTGATTCTTGCTACCCAAACA 2795
Query 544 AACAAAGCTTTTTGGCACCTTATAGATCTTCGCGGAA-CGGGGTTGTTATG-TATCACAT 601
||||| | ||| | || | ||||||||| || || || || | |||| | | ||||| ||
Sbjct 2796 AACAAGGATTTCTAGCTCTTTATAGATCGTCACGAAATCGAG-TTGTGA-GATATCATAT 2853
Query 602 GTCACAGTTCTA-CAATGGTCCTCCTCCAAGAAATAAACAAGAGTTGTTTAATCGATGCC 660
||| || ||||| | |||||||||||| ||||| ||||| || ||||||| | ||| |
Sbjct 2854 GTCTCAATTCTATCC-TGGTCCTCCTCCTAGAAACAAACATGAACTGTTTAACCAATGTC 2912
Query 661 ATGCATCTCTACGTTCTGTTATTGAAAGAACAT-TTGGAGTTTG 703
| ||||| ||||||||||||| || ||||| | ||||||||||
Sbjct 2913 ACACATCTTTACGTTCTGTTATCGAGAGAAC-TGTTGGAGTTTG 2955
> AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD
LENGTH=3455
Length=3455
Score = 357 bits (193), Expect = 1e-97
Identities = 321/383 (84%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 152 ATTTTTTGAAGTCCTTAGAGCAACAAAGTTACTTACTTGTGATTATATCAAGACTCCAAC 211
||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 2668 ATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGACTCCAAC 2727
Query 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAAGATATTG-GCCAT 270
||||||||||||| ||||||| |||| || ||||| | | |||||||||| | |||||
Sbjct 2728 AAGACAAGAACTATACCGAATTCATGAACAATTGCAAGTAGCTCGAAGATAT-GAGCCAT 2786
Query 271 ATTTTAGTGGATTTGTTGGAGCTA-TAGATGGAGTTCATGTATGTGTTAAGGTGAAGCCT 329
|||||| ||||||| ||||||| | | |||||||||||||| || ||||||||||| ||
Sbjct 2787 ATTTTAATGGATTTATTGGAGCAAAT-GATGGAGTTCATGTCTGCGTTAAGGTGAAACCC 2845
Query 330 GAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATA 389
|| |||||||||| |||||| ||||||| | ||||||||| || || |||||||||||
Sbjct 2846 GAGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCATGGCAATA 2905
Query 390 TGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTGGATCATGTCACGAT 449
|||||| | ||||||||||| |||||||||||||| ||| ||| |||| | ||| |||
Sbjct 2906 TGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTTATCATGAT 2965
Query 450 ACAGCAGTTCTAACGATGGCACAAGATA-ATGATTATGAATTTCCTTTGCCTCTGAGAGA 508
||||||||||| || || |||||||| | | |||| |||||||| ||||| || | |||
Sbjct 2966 ACAGCAGTTCTCACAATCGCACAAGACAGA-GATTCTGAATTTCTTTTGCTTCCAACAGA 3024
Query 509 CA-AGTATTATGTAGTTGATTCT 530
| | |||||| |||||||||||
Sbjct 3025 AATA-TATTATCTAGTTGATTCT 3046
Score = 193 bits (104), Expect = 3e-48
Identities = 316/415 (76%), Gaps = 27/415 (7%)
Strand=Plus/Plus
Query 570 TCTTCGCGGAACGGGGTTGTT-ATGTATCACATGTCACAGTTCT-ACAATGGTCCTCCTC 627
||||| || ||| | ||| || || ||||| ||| |||| || | | |||| ||||||||
Sbjct 3054 TCTTCACGAAACAGAGTTATTCAT-TATCATATGGCACAATT-TGAAAATGCTCCTCCTC 3111
Query 628 CAAGAAATAAACAAG-AGTTGTTTAATCGATGCCATGCATCTCTACGTTCTGTTATTGAA 686
| || ||||| | || | | ||||||||||| ||||||||| |||||| | |||||||
Sbjct 3112 CTAGGAATAAGC-AGAAACTATTTAATCGATGTCATGCATCTTTACGTTTTATTATTGAG 3170
Query 687 AGAACATTTGGAGTTTGGAAG-AAAAAATGGAGGATTCTAAGTGATTTTCCCAGATATGA 745
|| |||||||| |||||||| |||||||| |||||||| |||| || | |||||| |
Sbjct 3171 AGGTCATTTGGAATTTGGAAGAAAAAAATGAAGGATTCTTTGTGA-ATTACTAGATAT-A 3228
Query 746 -TATTGATGTTaaaaaaaGAGTGGTAATGGCTACAATGGGACTACATAATTTTATCAGAA 804
|| | ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 3229 CTACTCTTGTGCAAAAGAGAGTAGTAATGGCTACAATGGGACTACATAATTTTATCATAA 3288
Query 805 TTTCGAATTATTTTGACG-AA-GATTTTGTTGAAGTGATGGGAGATACAAATATCAACA- 861
|||| || ||||| | || ||||||| ||||| |||||||| ||| | || | |
Sbjct 3289 TTTCAAA--ATTTTCATATAAAGATTTTGGAGAAGTAATGGGAGAAACAGAGATTA-CGG 3345
Query 862 ACGTAAATTCTGAGAA-TGATCT-AGATGA-CATGGAGAGTG-ATG-GTATACCTGATGG 916
|| ||||| ||| || || || || || ||| || | || | | | ||| | || |
Sbjct 3346 ACACAAATTTTGA-AACTGG-CTTAGG-GAACATCGAAACTGCA-GAG-ATAGTTAATAG 3400
Query 917 AAATCATATGGCAAATATAAGAGAAAAT-ATTGCAGATATGTTATGGGCAAATCA 970
|| | | | ||||||| || |||||| |||| |||||||||||||| ||||||
Sbjct 3401 CGATAAAAAGCCAAATATGAGGGAAAATTATTGTAGATATGTTATGGGAAAATCA 3455
> AT1G43723.1 | Symbols: | transposable element gene | chr1:16498989-16500296
REVERSE LENGTH=1308
Length=1308
Score = 291 bits (157), Expect = 1e-77
Identities = 477/623 (77%), Gaps = 56/623 (9%)
Strand=Plus/Plus
Query 189 TGTGATTATATCAAG-ACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAAAACTGCA 247
||||||||||| || ||||||| || ||||| |||| |||||||||||||| ||| ||
Sbjct 502 TGTGATTATAT-TAGAACTCCAATAACTCAAGATCTACATCGAATTCCTGAAAGACTTCA 560
Query 248 AATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGATGG-AGTTC 306
| | |||| ||||||||||||||||||||||||||||||||||||||| ||||| | | |
Sbjct 561 AGTAGATCAAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATGGATGGGACT-C 619
Query 307 ATGTATGTGTTAAGGTGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACGATAGAA 366
|||| ||||| || |||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct 620 ATGTTTGTGTAAAAGTGAAGCCTGAATTACAAGAAATGTATTTGAATCGACACGATA-A- 677
Query 367 CATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAACG 426
| | ||| | | | ||| ||| | ||| || |||||| ||| ||| |
Sbjct 678 --T-G--------CAT--C--T-T-TGA-ATA--T--GTTATTCACATATATTTTGAATG 715
Query 427 GAGCACCTGG-ATCATGTCACGATACAGCAGTTCTAACGATGGCACAA-GATAATGATTA 484
|||| ||| ||||| |||||| ||| | ||||| || ||| ||||| || | |||||
Sbjct 716 AAGCAA-TGGGATCATATCACGACACAACTGTTCTTACAATGACACAATGA-AGTGATTC 773
Query 485 TGA-ATTTCCTTTGCCTCTGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAAATA 543
||| ||| |||| || || | ||| ||||| || || ||||||||| | |||||||| |
Sbjct 774 TGATATTCCCTT-GCTTCCGCTAGAAAAGTACTACGTCGTTGATTCTTGCTATCCAAACA 832
Query 544 AACAAAGCT-TTTTGGCACCTTATAGATCTTCGCG--GAACGGGGTTGTTATGTATCACA 600
||||| | ||||||| | ||| || || || | | | | || |||| |||||| |
Sbjct 833 GACAAAA-TGTTTTGGCTCTTTACAGCTCATCAAGATGTA-GAAGT-GTTAGGTATCATA 889
Query 601 TGTCACAGTTCTACAATGGTCCT-CCTCCAAGAAATAA-ACAAGAGTTGTTTAATCGATG 658
|||| |||||||| || | | ||| |||||||||| | || | |||||||||||||
Sbjct 890 TGTCGCAGTTCTATTCCGGAC-TACCTACAAGAAATAAGA-AACAACTGTTTAATCGATG 947
Query 659 CCATGCATC-TCTACGTTCT-GTTATTGAA-AGAACATTTGGAGTTTGGAAGAAAAAATG 715
|||||||| | |||||| | || ||| || ||||| ||||||||||| ||| |||||
Sbjct 948 TCATGCATCAT-TACGTT-TAGT-ATT-AAGAGAACTTTTGGAGTTTGTT-GAAGAAATG 1002
Query 716 GAGGATTCTAAGTGATTTTCCCA-GATATGATATTGATGTTaaaaaa-aGAGTGGTAATG 773
||| ||||| | ||||| | || ||||| ||||| | | | |||| ||||||||||||
Sbjct 1003 GAGAATTCTTTGAGATTT-CGCAAGATATAATATTCAAAT-ACAAAAGAGAGTGGTAATG 1060
Query 774 GCTACAATGGGACTACATAATTT 796
|||||||| || |||| |||||
Sbjct 1061 ACTACAATGAGATTACACAATTT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5