BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497225
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45070.1 | Symbols: AtPP2-A8, PP2-A8 | phloem protein 2-A8 |... 1587 0.0
> AT5G45070.1 | Symbols: AtPP2-A8, PP2-A8 | phloem protein 2-A8
| chr5:18187630-18189431 REVERSE LENGTH=1403
Length=1403
Score = 1587 bits (859), Expect = 0.0
Identities = 1099/1215 (90%), Gaps = 15/1215 (1%)
Strand=Plus/Plus
Query 26 aaaaaGTTTTCTTATGGCTGCTTCTTCTTCTGTGAGACCAACCACAACGGGACCTCAAGT 85
|||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 57 AAAAAGCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116
Query 86 GTTCATCAACTTCCGCGGAAAAGATGTGCGCAACGGCTTCTTAAGCTTTCTTGAGCCTGC 145
||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176
Query 146 CATGAGAGAAGCTAACATAAACGTCTTCATAGACAAGCACGAAGTGGTGGGCACAGATCT 205
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236
Query 206 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAGAGTCGTGGTGGTGATCTTCTCTAAGGA 265
||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGA 296
Query 266 TTACACAAGTTCGGAATGGTGCTTAGATGAACTGGCCCAGATCAAGGATTGCATTGATCA 325
||||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 297 CTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCA 356
Query 326 AGGCGGTCTCAATGTGATTCCCATCTTTTACAAACTTGCACCTTCCTCCGTGGAAGAACT 385
|||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 357 AGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACT 416
Query 386 CAAAGGAGGCTTTGGCGATAGTTTCAGGGTTCTAAA-GTGCAAATACAAAGACGAGCCTG 444
||||||||| |||||||||| ||||||||||||||| | | ||||| ||| | || ||||
Sbjct 417 CAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAG-AAATATAAAAATGATCCTG 475
Query 445 AAAGAACTCAAAAATGGGAAGAAGCTTTAAAGTATATTCCTAAAATAAAGGGCCTGACCT 504
||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| |
Sbjct 476 AAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGAT 535
Query 505 TGTCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATTTATGAAACGATTTTCGAGATTC 564
|| |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 536 TGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTC 595
Query 565 AGAGATCGCTGTCACAAATCGCCG-TGAAGGGAAACCCGAAGTTAGAATCGAATTCACTA 623
| | | |||||| ||||||| || ||||||||||||| ||| |||||||||||||| |
Sbjct 596 AAAAAGCGCTGTGGCAAATCG-CGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAA 654
Query 624 GGAGGATTTATGGTCCCTGCAAGGAGACTTGTCATTACTCACGCTGAGAATCCTGAAAAA 683
||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||||||||
Sbjct 655 GGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAA 714
Query 684 TGGACCTGGAGTGCTATCTACGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 743
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 774
Query 744 ATTAACACTCACAGC-TTGATAAAAATAAACGGAGATTTTCACACGAGAAAATTGATACC 802
|||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 775 ATTAACACTCAC-GCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACC 833
Query 803 GGGGAAAAAGTACGAGGTGGTGTTTCTTGTGAGGCTAGATGATACATCTTTGGGATGGAA 862
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||
Sbjct 834 AGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAA 893
Query 863 GAATGACGTGACCCTGACGCTGAAGCTGGTCATGGGTGATAAAACCGGAAATGAGAAAGA 922
|||||| |||||||||||||||||| |||| ||| ||||| || ||| |||| |||||
Sbjct 894 GAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGC 953
Query 923 GAA-AAAGTTGTGCTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCTTGTCGGAG 981
||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 954 GAAGAAA-TTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAG 1012
Query 982 AATTTGAGGCGCCGCCAA-AGAAAGATGACGCAAAGATCTTTTTCTCGATGTCTCAG-TA 1039
| |||||||| |||| || ||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1013 ACTTTGAGGCACCGC-AAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTT 1071
Query 1040 TGTGGACACTGACAAGAAGAGTGGTCTTGTTGTCAAAGGTTTTGCAATTCGTCCAGCGTA 1099
| || ||||||| | |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1072 T-TGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCA 1130
Query 1100 GTGAGGCACAAAAGCAAAGCATATTGGATCAAATTTCTGTTTTAACTATATTTATAGAAC 1159
|| |||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 1131 GTAAGGCACAAAACCAAAGCATATTGGATCTAATTTCTGTT--AACTATATTTATATAAC 1188
Query 1160 TTCAATTTCTGGTTTAAAGTTTGTACtttttttttttttGTAAGTCAGAGTCTGTACTTT 1219
|| ||| |||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1189 CTCTATTA-TGGTTTAAAGTTTGTAATTTTTTTTTTCCTGTAAGTCAGAGTCTGTACTTT 1247
Query 1220 CTTGTTTTTGTTTTG 1234
|||||||| || |||
Sbjct 1248 CTTGTTTTCGTATTG 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5