BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497230
Length=337
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 484 2e-136
> AT3G09280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: root; Has
31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2850920-2851258
REVERSE LENGTH=339
Length=339
Score = 484 bits (262), Expect = 2e-136
Identities = 313/338 (93%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 1 ATGGATACAAAACTTATAGTTCTATGCTTCTTGCTAACGTAC-TCCTTGACCATGGCGGC 59
|||||| | |||| |||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1 ATGGATGCGAAACATATAGTTCTATGCTTCTTGCTAACGTACGT-CTTCTCCATGGCGGC 59
Query 60 AGTCTCATCGGAAGCTGAGCCTCCAACAACAAGGAAATTCGGCAGGCACGATTGGCCAGA 119
|| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 60 AGCCTCATCGGAAGCTGAGCCTCCGGCAACAAGGAAACTCGGCAGGCACGAATGGCCAGG 119
Query 120 AGCGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTAGGGCGAGGCAACCA 179
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 120 AGAGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCACCA 179
Query 180 CGATTCCACGGTGGAAAGATCGGTCGCAGGCGGTGGAGTTATTCTTGGAGGCTTAGCGAC 239
| |||||||||||||||||||||| || || |||||||||||||| ||||||||||| ||
Sbjct 180 CCATTCCACGGTGGAAAGATCGGTTGCCGGAGGTGGAGTTATTCTCGGAGGCTTAGCTAC 239
Query 240 TACGTTTCTTGTGGTGGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATTA 299
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACGTTTCTTGTGGTAGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATTA 299
Query 300 TGATGAAAAGGAGACTGAGACCCCTAAGGTGTTAGTTT 337
||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TGATGAAAAGGAGACTGAGACCCCTAAAGTGTTAGTTT 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15733805437
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5