BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497236
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60120.2 | Symbols: TOE2 | target of early activation tagged... 1768 0.0
> AT5G60120.2 | Symbols: TOE2 | target of early activation tagged
(EAT) 2 | chr5:24207689-24211743 FORWARD LENGTH=2297
Length=2297
Score = 1768 bits (957), Expect = 0.0
Identities = 1235/1357 (91%), Gaps = 68/1357 (5%)
Strand=Plus/Plus
Query 39 TCCATGTCTCCTCAATCTCGTTTCTCTCCTTAGTGATCGAGC-TTTTCCTTCTTTCTC-- 95
||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 154 TCCATGTCTCCTCAATCTCATTTCTCTCCTTAGTGATTGAGCTTTTTCCTTCTTTCTCTT 213
Query 96 T-GTAATTATT--AT-TCCT--T-C-TC------------CATTTCAGAATCTAAATCTC 135
| || |||||| | |||| | | || |||||||||||||||||||
Sbjct 214 TGGTTATTATTCCTTCTCCTCCTCCGTCGTGTTTTTGATTGATTTCAGAATCTAAATCTC 273
Query 136 TCTGATTT-ATTTTTCCATACACTTACAGATTTTCTCCGATGAAATGTGATTTTTGAGCT 194
| | ||| |||| ||||||| | | | ||||||| || ||| |||||||||| ||||||
Sbjct 274 -C-G-TTTGATTTCTCCATACTCGTGCTGATTTTCACCTATGTAATGTGATTTATGAGCT 330
Query 195 CTGTTTATTTCAAATCGACGGCGATCGTTGAAATTTATTGATCAATGTGTAAGTAAGAGC 254
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 331 CTGTTTATTTCAAATCGACGGCGATCGTTG-AATTTATTGATCAATGTGTAAGTAAGAGC 389
Query 255 TTGAAGAAATA------gttgttgttgt------t----gttttgtttacttttttgttg 298
||||||||||| ||||||||||| | ||||||||| |||||||||||
Sbjct 390 TTGAAGAAATAGTTTTTGTTGTTGTTGTGAAAGCTCAGAGTTTTGTTTGCTTTTTTGTTG 449
Query 299 ac-tttttgAGATTGATGCTGGATCTCAATCTCGACGTCGACTCGGCCGAGTCTACTCAG 357
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 450 ACTTTTTTGAGATTGATGCTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAG 509
Query 358 AACGAACGAGATTCGGTTACTGTTGAAGGGGTTTCTTTGAATCAGATGGATGAATCAGTG 417
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 510 AACGAACGAGATTCGATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCGGTG 569
Query 418 ACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGCATAGATGGTGAAGATGAG 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 570 ACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAG 629
Query 478 TTGTGTTCTACACGAACCGTCAAGTTTCAATTTGAGATACTAAAAGGAGGAGAGgaagaa 537
||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||
Sbjct 630 TTGTGCTCTACACGAACGGTCAAGTTTCAATTTGAGATACTGAAAGGA-G-GAGG-AGAA 686
Query 538 gaagaagaagaagatgatgatgaaagaagTGCTGTGATGATGACTAAGGAGTTTTTTCCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GAAGAAGAAGAAGATGATGATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCT 746
Query 598 GTTGCTAAAGGCATGAATTTTATGGATTCGAGCGCACAAAGTTCCAGGAGCACCGTTGAT 657
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 747 GTTGCTAAAGGCATGAACTTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGAT 806
Query 658 ATTTCCTTCCAGAGAGGGAAACAAGGCGGAGAC-TT-T-GGT-------GC--------C 699
|||||||||||||| ||||||||||| |||||| || | ||| || |
Sbjct 807 ATTTCCTTCCAGAGGGGGAAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTGGC 866
Query 700 GATGCTGCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCT 759
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GATGCTTCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCT 926
Query 760 AGGTCTAAGAGTTCGCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGGAGATGGGAA 819
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 927 AGGTCTAAGAGTTCTCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGCAGATGGGAA 986
Query 820 TCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCT 1046
Query 880 GCAGCTAGGGCGTATGATCGAGCTGCTGTCAAGTTCCGGGGTCTGGAGGCTGACATCAAT 939
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1047 GCAGCTAGGGCGTATGATCGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAAT 1106
Query 940 TTCATTATCAGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAA 999
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TTCGTTATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAA 1166
Query 1000 GTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAACTCAAGATATCAA 1059
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1167 GTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAA 1226
Query 1060 GGAGTTTCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGTTTCATGGAAAC 1119
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1227 GGAGTTGCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGCTTCATGGAAAC 1286
Query 1120 ATGGCTTCTGACAAGGCAGCCATACAATGGAATGGAAGGGAAGCGGCTTCCTTAATTGAG 1179
|||| || ||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 1287 ATGGGTTGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTTAATTGAG 1346
Query 1180 CCTCATGCATCCCGGATGATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGA 1239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CCTCATGCATCCCGAATGATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGA 1406
Query 1240 ATCTCTCTTTCACTGGGAGATGGTCCAAAGCAAAAAGAAAGGGCTCTTCGGCTTCACCAT 1299
|||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 1407 ATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACCAT 1466
Query 1300 GTCCCTAATA-TTACTGTATGTGGAAGGAACATCATG 1335
|||||||| | || | |||||||||||||||| ||||
Sbjct 1467 GTCCCTAACAATTCC-GTATGTGGAAGGAACACCATG 1502
Score = 719 bits (389), Expect = 0.0
Identities = 430/450 (96%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 1336 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1628
Query 1396 TCAGACCATCTTAATAACCGGCATTCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGA 1455
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1629 TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGA 1688
Query 1456 ACACCAGAGAAAGGTCATATGTTACGTTCTCATCAAAGCTTCCCAGCCAGGACATGGCAA 1515
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 ACACCAGAGAAAGGGCTTATGTTACGTTCTCATCAAAGCTTCCCAGCCAGGACATGGCAA 1748
Query 1516 GGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCTCTGTTCTCA 1575
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1749 GGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCACTGTTTTCA 1808
Query 1576 AATGCAGCATCATCAGGATTCTCACTCTCAGCTACACGCCCACCTTCATCCATAGCTACT 1635
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1809 AATGCAGCATCATCAGGATTCTCACTCTCAGCTACACGCCCTCCTTCATCCACAGCTATT 1868
Query 1636 CCTCATCCCTCTCAGCCCTTCTTAAATATGAATCAGCCCGGTCTCTATGTTATCCACCCA 1695
| |||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 1869 CATCATCCTTCTCAGCCCTTCGTCAATCTGAATCAGCCCGGTCTCTATGTTATCCACCCA 1928
Query 1696 TCTGATTACACATCTCAGCACCACCACAATCTCATGAATCGCCCACAACCACCACCATAG 1755
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1929 TCTGATTACATATCTCAGCACCAACACAATCTCATGAACCGCCCACAACCACCACCATAG 1988
Query 1756 CTTCCTCCTTC-TCCCGCCTAGCTCAAGGT 1784
||||||||||| ||| || || ||||||||
Sbjct 1989 CTTCCTCCTTCCTCC-GCATAACTCAAGGT 2017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88252558110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5