BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497237
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55760.1 | Symbols: SRT1 | sirtuin 1 | chr5:22567222-2257096... 2575 0.0
> AT5G55760.1 | Symbols: SRT1 | sirtuin 1 | chr5:22567222-22570963
FORWARD LENGTH=1729
Length=1729
Score = 2575 bits (1394), Expect = 0.0
Identities = 1558/1638 (95%), Gaps = 7/1638 (0%)
Strand=Plus/Plus
Query 1 GAGAGGCAGAGAAGGTGGTTC--C-TCTTGTCCAAAAGAGAAGAC-AAATCTAAATGTCT 56
|||||||||||||||| |||| | |||||||||||||||||||| ||| ||||||||||
Sbjct 8 GAGAGGCAGAGAAGGT-GTTCTTCTTCTTGTCCAAAAGAGAAGACAAAACCTAAATGTCT 66
Query 57 TTAGGTTACGCTGAGAAATTATCCTTCATTGAAGATGTTGGTCAGGTCGGCATGGCCGAA 116
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 67 TTAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAA 126
Query 117 TTCTTCGACCCATCTCATGTACTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAA 176
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAA 186
Query 177 AAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCT 246
Query 237 GATTTCCGAGGCCCCAAAGGAATTTGGACGCTACAGCGCGAGGGCAAAGATTTACCCAAA 296
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 247 GATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAA 306
Query 297 GCATCTCTGCCATTTCATCGTGCAATGCCGAGCATGACTCATATGGCTTTGGTTGAATTA 356
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 307 GCATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTA 366
Query 357 GAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGACGGCTTACATCTTCGA 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 367 GAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGA 426
Query 417 TCTGGAATACCAAGAGAAAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGT 476
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TCTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGC 486
Query 477 CCATCTTGTGGAGCAAAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAG 536
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CCATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAG 546
Query 537 ACATCAAGAAGGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCCTAGAC 596
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 547 ACATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGAT 606
Query 597 TGGGAGGATGCTTTGCCTCCGAAAGAGATTGATCCAGCAGAGAAGCACTGCAAAATGGCT 656
|||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||
Sbjct 607 TGGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCT 666
Query 657 GATCTTGTACTTTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTC 716
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTC 726
Query 717 AAGTGTCTCAGAGGTGGAGGCAAGATCGTGATAGTCAATCTTCAGAAAACCCCGAAGGAC 776
|||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 727 AAGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGAC 786
Query 777 AAGAAAGCAAATGTTGTAATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAA 836
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAA 846
Query 837 TCTCTCAACATGAAGATTCCTCCATATGTCAGAATCGATCTTTTCCAGATAATCCTAACT 896
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 847 TCGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACT 906
Query 897 CAATCTTTAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCAAGTGTTCAT 956
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 907 CAATCTATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCAT 966
Query 957 GGATTGACTTCTCAGTTACCATTCATCGAGTCTATCGAGGTTTCTTTTTCAGATAACCAG 1016
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 967 GGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCAT 1026
Query 1017 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1086
Query 1077 AACGAAACTTTTGATATATTCTTCAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1087 AACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1146
Query 1137 ACTCAACTTAGCCTCCCATTTGAATTCAAGGTTTCAACAAAAGAGCATGTAGAGATTATT 1196
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1147 ACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATT 1206
Query 1197 GACAAGGAGGCAGTGCTACAAAGCCTGAGGGAGAAAGCGGTTGAAGAATCCAGTTGCGGG 1256
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1207 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGG 1266
Query 1257 CAAAGCGGTGTGGTTGAGAGAAGAGCGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1267 CAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1326
Query 1317 GCTACTGTGACCAGTCTCAGGACTTACCATTGTCAACAATCTCTGCTTGCTAATGGATAC 1376
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1327 GCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGAC 1386
Query 1377 CTCAAATGGAAGCTGGAAGGTTCTGGAACGTCCCGTAAACGTTCTAGAACCGGCAAACGA 1436
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 1387 CTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGA 1446
Query 1437 AAATCAAAGGCACAGGAAGAAGAATCCAAGGCATAGGAAAGAAGAAAAGAAAGCTTTTGG 1496
||||| ||||| | || ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1447 AAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAGGAA-GAAGAAAAGAAAGCTTTTGG 1505
Query 1497 TGTATATAAACAAACACTAGTCTAACCGGAATAGAAAATATGGAAGTTAGTGGCGTTTTG 1556
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1506 TGTATATAAAGAAACACTAGTCTAACCGGAATAGGTAATATGGAAGTTATTGGCGTTTTG 1565
Query 1557 AGGGCTGAGTGAATTTTGTTTTTGGTCCACACTCGGTTCT-TTAAAACCGAAGTTAACCA 1615
|| |||||||||||||||||||||||||||| |||||||| || |||| ||||||||||
Sbjct 1566 AGAGCTGAGTGAATTTTGTTTTTGGTCCACATTCGGTTCTCTTGAAACAAAAGTTAACCA 1625
Query 1616 GGAATTGAAGGGGATAAT 1633
||||||||| | ||||||
Sbjct 1626 GGAATTGAAAGAGATAAT 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5