BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497238

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31930.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   689    0.0  


> AT2G31930.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13577555-13578248 
FORWARD LENGTH=694
Length=694

 Score =  689 bits (373),  Expect = 0.0
 Identities = 458/498 (92%), Gaps = 10/498 (2%)
 Strand=Plus/Plus

Query  1    TAACCATGGGAGGTGAAGTAATAAACCCAACCAAGCCACGGTTTGATCTAAGCATGTCAA  60
            ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct  7    TAACCATGGGAAGTGAAGTAGTAAACCCGACCAAGCCACGGTTTGATCTAAGCATGTCGA  66

Query  61   AAAGAACTCGAAAACCATGGTCTAGTCTCATCAACGATACGCATCACCATGAAATCTCCA  120
            ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||
Sbjct  67   AAAGAACTCGAAAACCATGGTCTAGTCTCATCAACGATATGCATCACCATGCAATATGCA  126

Query  121  CGCAAAGCTCACAACCGAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATTG  180
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  CCCAAAGCTCACAACCAAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATTG  186

Query  181  ATCGTAAGAGTTTGAACAATCTGATGAGATACGAGGAGAAGCCAAATGGAGAAGCTAATG  240
            |||||||||||||||||||||||||||||| ||| |||||    |||||||||||| |||
Sbjct  187  ATCGTAAGAGTTTGAACAATCTGATGAGATGCGATGAGAAATTGAATGGAGAAGCTGATG  246

Query  241  TTAACAACGACAAGAGCTCTCTAGATCAACATTTCG-GTGATGACGAGGGGATCAAGCAG  299
            |||||||| | | ||||||||||||||||||||||| | |||| |||||||||||||| |
Sbjct  247  TTAACAAC-A-A-GAGCTCTCTAGATCAACATTTCGAG-GATGGCGAGGGGATCAAGCCG  302

Query  300  ACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTGTGAAATTCAAAGGTATGATG  359
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  303  ACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTTTGAAATTCAAAGGTATGGTG  362

Query  360  GGTCGATATGTTAAGGTTTGGAGCGGTTTGATAAAGGCCAAGCGTGACCGCAAAACGCCG  419
            ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||
Sbjct  363  GGTCGATATGTTAAGGTCTGGAGCGGTTTGATAAAGGCCAAACGTGACCACAAATCGCCG  422

Query  420  GTCTTACGGTTTAAAACTTGATTTCGATCGTATATACGTATGTTTCATGTACGTGATCAC  479
            ||||| ||||||||||||||| | |   | |||||||||| ||||||| |||||||||||
Sbjct  423  GTCTTTCGGTTTAAAACTTGAAT-C---C-TATATACGTACGTTTCATATACGTGATCAC  477

Query  480  ATATACATATATTATACG  497
            ||||| ||||||||||||
Sbjct  478  ATATATATATATTATACG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5