BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497239

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31940.1 | Symbols:  | unknown protein; INVOLVED IN: biologi...   560    3e-159


> AT2G31940.1 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; LOCATED IN: endomembrane system; EXPRESSED 
IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins 
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:13580600-13581112 FORWARD LENGTH=513
Length=513

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 344/364 (95%), Gaps = 2/364 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGAGATCAAGAAGGAAGCCCTCCAGTTCCCTTACATCTCTGCGTCTTCGTCCTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGGGAAGAGATCAAGAAGGAAGCCCTCCAGTTCCCTTACATCTCTGCGTCTTCGTCTTG  60

Query  61   ATCCTATTAATGTTCGTAACGATCTCATGGTACGCGAGCTACGAACCAGTCATAGAAGGA  120
            ||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| 
Sbjct  61   ATCCTCTTAATGTTCGTAACAATCTCATGGTACGCCAGCTACGAACCAGTTATAGAAGGT  120

Query  121  TTTACGGATCAGTTCAAGCTCGCTCTCATGGCTTCTCCTCTGCTTTTGCTCTTGGCCGTC  180
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| 
Sbjct  121  TTTACGTATCAGTTCAAGCTTGCTCTCATGGCTTCTCCTCTGCTTTTGCTCTTAGCCGTT  180

Query  181  CATTTTCTATCCAACGAT-AGAGGAGTAGGAGGGATGATGACGTCTTTGATCCATCTGAA  239
            |||||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct  181  CATTTTCTATCCGATGATCA-AGGAGTCGGAGGGATGATGACGTCTTTGATCCATCTGAA  239

Query  240  CGAAAGAGAGTCTTTGTATAGAGCTGGAGGAACACCATGGGGAGTCGCCTTCATGCTTGT  299
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  240  CGAAAGAGAGTCTTTGTATAGAGCTGGAGGAACACCGTGGGGAGTGGCCTTCATGCTTGT  299

Query  300  CTTTCTCTTCTTCATGGTTTCGTACCAATCTCAGTTTCAAGAACGTTGGTTTCCTCTTCG  359
            ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct  300  CTTTCTCTTCTTCATGGTTTCTTATCAATCTCAGTTTCAAGAACGTTGGTTTCCTCTTAG  359

Query  360  ATAA  363
            ||||
Sbjct  360  ATAA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5