BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497240 Length=355 Score E Sequences producing significant alignments: (Bits) Value AT2G31945.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 322 1e-87 > AT2G31945.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13581581-13582126 FORWARD LENGTH=546 Length=546 Score = 322 bits (174), Expect = 1e-87 Identities = 214/233 (92%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 4 GGAGGCTTAGGAACGATGTTGATGAAGGTGGCCTTATTTGCTCTGGTACAAGGTTTGGTG 63 |||||||| |||||||||||||||||||| ||||||||||| || || |||||||||||| Sbjct 117 GGAGGCTTGGGAACGATGTTGATGAAGGTTGCCTTATTTGCCCTAGTTCAAGGTTTGGTG 176 Query 64 TATCTCATCCTCTCGAAATCGTCGAAGGTTTTCT-CTACATCGAATTCGTTGAGAAA-GG 121 ||||||||||||| ||||||||||| |||||| | ||| |||||||||||||| ||| || Sbjct 177 TATCTCATCCTCTTGAAATCGTCGAGGGTTTT-TGCTAGATCGAATTCGTTGA-AAAGGG 234 Query 122 CTTACAGTTTCCGGCCGATGAGGTCCGTCAGCATCCGCCGGATTCTGGCGTCACTTCAGG 181 ||||||||||||| ||||||||||| ||||||||||| |||||||||||| | ||||||| Sbjct 235 CTTACAGTTTCCGACCGATGAGGTCAGTCAGCATCCGTCGGATTCTGGCGGCGCTTCAGG 294 Query 182 ATATTCCTGCTGGCGACGATATGTCTCCTTCATCTAACGGCtcttcttcttct 234 |||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 295 ATATTCCTGCTGGCGACGATATGTCTCCTTCATCTAACGGGTCCTCTTCTTCT 347 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16638624919 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5