BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497242

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31957.1 | Symbols: LCR75, LCR79 | low-molecular-weight cyst...   156    1e-37


> AT2G31957.1 | Symbols: LCR75, LCR79 | low-molecular-weight cysteine-rich 
75 | chr2:13587709-13588252 FORWARD LENGTH=314
Length=314

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 120/135 (89%), Gaps = 12/135 (9%)
 Strand=Plus/Plus

Query  170  GTTTCACTGACGGTCGTTGCAAAGGATTCACCCGCAACTGCATTTGTAGCAAACTTTGTT  229
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  173  GTTTCACTGACGGTCGTTGCAAAGGATTCACCCGCAAATGCATTTGTAGCAAACCTTGTT  232

Query  230  TTGTCCCTTC-TAATTAAA-----GTTT-T--T-ATTTTGATATTAAA-TTTTAAAATAA  278
            |||||| ||| |||||||      |||| |  | |||||||||||||| |||||||||||
Sbjct  233  TTGTCC-TTCCTAATTAAGTTCTTGTTTCTCATTATTTTGATATTAAAATTTTAAAATAA  291

Query  279  TAACACAATTCATTA  293
            |||||||||||||||
Sbjct  292  TAACACAATTCATTA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5