BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497246
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 |... 2015 0.0
AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of pl... 876 0.0
> AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43
| chr3:1685003-1687558 FORWARD LENGTH=1584
Length=1584
Score = 2015 bits (1091), Expect = 0.0
Identities = 1238/1305 (95%), Gaps = 26/1305 (2%)
Strand=Plus/Plus
Query 1 TTGTGAATCTCGGAGCTGTTTTTCTCCGTCGGAGAACTTTGATCCCGCCGGTA-ATCGGC 59
|||||||||| || |||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 24 TTGTGAATCTGGGCGCTGTTTTTCTCCGTCGGAGAA-TTTGATCCCGCCGG-AGATCGGC 81
Query 60 CGGTTTCCGC---CG---TC---ACATT----CG---TT---TGCTTTGTCTATGATGAA 100
|||||||||| || || | || || || ||||||||||||||||||
Sbjct 82 CGGTTTCCGCAGTCGCATTCGTTTCTTTCGCGCGATTTTCGATGCTTTGTCTATGATGAA 141
Query 101 ACCGCGATCCTGTTCAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCTATCTAGA 160
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 142 ACCGCGATCCTGTTTAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCCATCTAGA 201
Query 161 CGCCGAGATCTTGGTTA-CTTATCACTGAGATTCTTCTAGGGTTTATATTTGAGCTGCTA 219
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||
Sbjct 202 CGCCGAGATCTTGGTTAGC-TATCACTGAGATTCTTATAGGGTTTATATTTGAGCTGTTA 260
Query 220 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAGCTCTCTAAGGAGCGTTC 279
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 261 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTTC 320
Query 280 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACGGTAACGGAGCACACTTCGTTGACCGGAG 339
||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 321 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGGAG 380
Query 340 CTAAATCCGGCTTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCGAATC 399
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 381 CTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCAAATC 440
Query 400 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGTAATTCGAGTAGAGGTACAATAACAG 459
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 441 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAATTCGAGTAGAGGTACAATAACAG 500
Query 460 TGGGATTACCACCAGATTGGCTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 519
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 501 TGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 560
Query 520 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 620
Query 580 GGGATGGTAAAGAAGATCAACATCAAATCGAGTCTTTGACACAAGAGATCACCTTCCTAT 639
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 621 GGGATGGTAAAGAAGATCAACATCAAATCGAGACTTTGACACAAGAGGTTACCTTCCTAT 680
Query 640 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 740
Query 700 ATGTCAGAAAAAACGTCCAGCGATCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGC 759
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 741 ATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTATGGAGT 800
Query 760 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGATCGG 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 801 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGAGCGG 860
Query 820 ATATAGAGATGAATCTGAACGGAAGCAGCTATAATGCAGAAGATGATGACTTTGATGATA 879
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 861 ATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTTGATGATA 920
Query 880 TGGTATTTAGTGAGCATCAAATAAGCAAGATAAAAAAGAGTGAGGAAATATCAGTAGAGA 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 921 TGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCAATAGAGA 980
Query 940 GGGAGAAAGAGATTCAACAGGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 999
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 981 GGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 1040
Query 1000 ATCTTTCCGCGCTTGTGATAGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCC 1059
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1041 ATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTATAATATCC 1100
Query 1060 AGAACGTTGCTAGTACCGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1160
Query 1120 AGAGACAAGGAGGTATGGTGATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGC 1179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1161 AGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTCATCATGC 1220
Query 1180 TGGTACTCTTAATCCTCAAGGAGATTCTCTTGTGACACAAGGAGATCCCTCATTATTTTT 1239
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1221 TGGTACTCTTAATCCTCAAGGAGATTCTGTTGTGACACAAGGAGATCCCTCATT-TTTTA 1279
Query 1240 ATTCTTTTGAAACAAGAACACCACA-TTTTTGCGTTGCGGAGTGT 1283
||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1280 ATTCTTTTGAAACGCGAACACCACAATTTTTGCGTTGCGGAGTGT 1324
> AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of
plants 41 | chr5:9488148-9490807 REVERSE LENGTH=1748
Length=1748
Score = 876 bits (474), Expect = 0.0
Identities = 858/1036 (83%), Gaps = 55/1036 (5%)
Strand=Plus/Plus
Query 194 TTCTAGGG-TTT-ATA-TTTGAGCTGCT-ATGGCGACTAGGAATCGTACGCTGTTGTTTA 249
|||||||| ||| | | ||||| | | | |||||||| |||||||||||| || ||||||
Sbjct 177 TTCTAGGGATTTCAAATTTTGA-C-GATCATGGCGACGAGGAATCGTACGTTGCTGTTTA 234
Query 250 GGAAGTACAGAAGCTCTCTAAGGAGCGTTC-GTGCTCCAATGGGGTCGTCTTCGTCGTCG 308
|||||||||||| |||||| || |||| || | ||||| || |||||| || | ||
Sbjct 235 GGAAGTACAGAAACTCTCTGAGAAGCG-TCAGAGCTCC-AT--TGTCGTCATC-T--TC- 286
Query 309 ACGGTAACGGAGCACACTTCGTTGACCGGAGCTAAATCCGGC-TTAGGCCCGGTGATCGA 367
| | |||| | | || || | || | | |||| || || |||||||||||
Sbjct 287 A--TTGACGG-G-A-AC-ACGAT--CC-G-G-------CGGCGTT-GGTCCGGTGATCGA 328
Query 368 GATGGCGAGCACGTC-TCTATTGAATCCGAATCGGTCTTATGCTCC-AGTCAGTACCGAG 425
||||||||| || || | |||||||||||||||| ||||| ||||| | | ||||||||
Sbjct 329 GATGGCGAGTACTTCGT-TATTGAATCCGAATCGCTCTTACGCTCCTA-TTAGTACCGAA 386
Query 426 GATCCTGGTAA-TTCGAGTAGAGGTACAATAACAGTGGGATTACCACCAGATTGGCTTGA 484
|||||||| || ||| |||| |||| | ||||||||||| |||||||||| |||| ||||
Sbjct 387 GATCCTGG-AACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGA 445
Query 485 TGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGGG 544
||| ||||||||||| || || | || || |||||||| || ||||||||||| |||||
Sbjct 446 TGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGG 505
Query 545 AAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATCA 604
|||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 506 AAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACAT-A 564
Query 605 A-ATCGAGTCTTTGACACAAGAGATCACCTTCCTATTGAAGAAATCTGAGAAGCAACTTC 663
| || |||||||||||||| ||||| || || ||||||||||| ||||||||||||||||
Sbjct 565 ATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTC 624
Query 664 AGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGAAAAAACGTCCAGCGAT 723
||||||||||||| | || |||||||||||||||||||| || ||||| || ||||| |
Sbjct 625 AGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGT 684
Query 724 CTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGCTACGCAAGAAACAGTCTACATATT 783
||||||| ||||| |||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 685 CTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATT 744
Query 784 TGAAACGTTTGAGACTA-CAAAAAGAGGATGG-ATCGGATATAGAGATGAATCTGAACGG 841
||||||| ||||| | | |||||||||||||| || |||| ||||||||||||||| | |
Sbjct 745 TGAAACGCTTGAGGC-AGCAAAAAGAGGATGGGAT-GGATTTAGAGATGAATCTGAGCAG 802
Query 842 AAGCAGCTATA-ATGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAAA 900
|| ||| |||| | | ||||| |||||||||| |||||| || | |||||||| |
Sbjct 803 AAACAGATATAGAC-CTGAAGAGGATGACTTTGGCGATATGTTAA--AC-GAGCATCAGA 858
Query 901 TAAGCAA-GATAAAAAAGAGTGAGGAAATATCAGTAGAGAGGGAGAAAGAGATTCAACAG 959
| ||| ||||||||||||||| ||| |||| |||||||||||||||||||| ||||||
Sbjct 859 TGT-CAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACAG 917
Query 960 GTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTTTCCGCGCTTGTGATA 1019
||||| ||||| |||| ||| |||||||| || |||||||||||||| || |||||||||
Sbjct 918 GTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGATA 977
Query 1020 GACCAGGGTACGATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACCGTC 1079
|| |||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| ||
Sbjct 978 GATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGTT 1037
Query 1080 GACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGGTG 1139
|| |||||||||||||| || || ||||| || || || |||||||| ||||||||||||
Sbjct 1038 GAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGTG 1097
Query 1140 ATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCAAG 1199
| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 1098 AAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAAG 1157
Query 1200 GAGAT-TCTCTTGTGA 1214
|| || | ||||||||
Sbjct 1158 GAAATAT-TCTTGTGA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5