BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497249
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50800.1 | Symbols: SWEET13, AtSWEET13 | Nodulin MtN3 family... 1524 0.0
AT4G25010.1 | Symbols: SWEET14, AtSWEET14 | Nodulin MtN3 family... 725 0.0
> AT5G50800.1 | Symbols: SWEET13, AtSWEET13 | Nodulin MtN3 family
protein | chr5:20665077-20667304 REVERSE LENGTH=1252
Length=1252
Score = 1524 bits (825), Expect = 0.0
Identities = 1015/1103 (92%), Gaps = 27/1103 (2%)
Strand=Plus/Plus
Query 108 AAACAAAAAGAAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGAATGTTGGGT 167
||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct 153 AAACATCAAGAAATGGCTCTAACTAACAATTTATGGGCATTTGTGTTTGGAATCTTGGGT 212
Query 168 AACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGGATATGCAAG 227
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 213 AACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACTTTTGTAAGGATATGCAAG 272
Query 228 AAGAAATCAACCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTTAGCGCGATG 287
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 273 AAGAAATCAACCGAAGGTTTTCAGTCTCTACCCTATGTTTCAGCACTTTTTAGCGCGATG 332
Query 288 CTTTGGATTTACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATCACCATAAAC 347
|||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||
Sbjct 333 CTTTGGATTTACTACGCTATGCAAAAAGATGGCACAGCCTTTCTTCTCATCACCATAAAC 392
Query 348 GCTGTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTATGCTAACAAG 407
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 393 GCTTTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTCTCCTATGCTAACAAG 452
Query 408 AAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGTTTTGCTGCC 467
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 453 AAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGATTTGCCGCC 512
Query 468 ATTGTTCTTGTCTGCGAGCTCTTAACCGAAGGTTCGACACGTGAGAAAGTTCTCGGAGGG 527
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 513 ATTGTTCTTGTCTGCGAGCTCTTAACCAAAGGTTCAACACGTGAGAAAGTTCTCGGAGGG 572
Query 528 ATTTGCGTTGGATTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTG 587
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 573 ATTTGCGTTGGATTTTCCGTCAGTGTTTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTG 632
Query 588 GTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGC 692
Query 648 GCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCGCTTCCAAAT 707
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 693 GCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCCCTTCCAAAT 752
Query 708 GTGTTGGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTTAAGTACTAC 767
|| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 753 GTATTAGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTCAAATACTAC 812
Query 768 AAAATTCCTATGGCTCAGAAGACAGACAAATCTAAAGCCGTGTCCGATCATTCTATCGAC 827
|||| |||| |||||||||||||||| ||||| |||| ||||||||||||||| ||||||
Sbjct 813 AAAACTCCTGTGGCTCAGAAGACAGATAAATCCAAAGACGTGTCCGATCATTCCATCGAC 872
Query 828 ATAGCAAAGCTAACCACCGTCACACCCGGTCCAATTTCGGATTCAGCAGTTCATCAACCG 887
|||||||||||||| ||||||| ||||||| || ||| |||||| || ||||||||||||
Sbjct 873 ATAGCAAAGCTAACGACCGTCATACCCGGTGCAGTTTTGGATTCCGCGGTTCATCAACCG 932
Query 888 CCT-CTTATTCACAATGTTCCGGAGACTCAAATTCAAGTT-ACTGAGGTCAAGAGCCAAA 945
||| || ||||||||||||| |||||| |||||||| || || |||||||||||||| |
Sbjct 933 CCTGCTC-TTCACAATGTTCCCGAGACTAAAATTCAA-TTGACCGAGGTCAAGAGCCAGA 990
Query 946 ACATAACTGATCCAAAAGATCAAATCAACAAGGATGTCGAGAACCAAAGTCAAGTTTAAG 1005
|||| || ||||| ||||| || ||||||||||||||| |||| ||||||||||||||||
Sbjct 991 ACATGACCGATCCGAAAGACCAGATCAACAAGGATGTCCAGAAACAAAGTCAAGTTTAAG 1050
Query 1006 TAGTGAATCTTATTTAGAGACTCATTAATAATGCATTGTTTGAGTTGTGCACTCTAGCTA 1065
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TAGTGAATCTTATTTAGAGCCTCATTAATAATGCATTGTTTGAGTTGTGCACTCTAGCTA 1110
Query 1066 ACTTTC-TTTCTACTCTAGCTTTTTCGATTTTGTGGT-TTAGT-TCTC-----------C 1111
|||||| ||| |||| ||||||||| ||||||||||| || || ||| |
Sbjct 1111 ACTTTCCTTT-TACTGTAGCTTTTTGGATTTTGTGGTCTTTGTCTCTTTAATTAGTTTTC 1169
Query 1112 T-GTACCACTTTTTGTT-C--ATCATTTTCTTTCCAGGGTATCTGGAAATTGTGCTATGT 1167
| |||||||||||| || | ||||||||| ||||||||||||||||||||||||||| |
Sbjct 1170 TTGTACCACTTTTTATTTCTCATCATTTTCATTCCAGGGTATCTGGAAATTGTGCTATAT 1229
Query 1168 -T---CAATAAATAAGTTGTTTT 1186
| ||||||||||||||||||
Sbjct 1230 ATGATCAATAAATAAGTTGTTTT 1252
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 71 CTTTTCCCCGCTCATAAGTTTTTTCGATAGTCCGACCAAACAAA 114
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 89 CTTTTTCCCGCTCATAAGTTTTTTCGATAGTCCGACCAAACAAA 132
> AT4G25010.1 | Symbols: SWEET14, AtSWEET14 | Nodulin MtN3 family
protein | chr4:12854385-12856541 REVERSE LENGTH=1281
Length=1281
Score = 725 bits (392), Expect = 0.0
Identities = 613/720 (85%), Gaps = 13/720 (2%)
Strand=Plus/Plus
Query 118 AAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGAATGTTGGGTAACATCATAT 177
|||||| ||| |||||||| |||| |||| || || ||| | |||||||||||||||
Sbjct 189 AAATGGTTCTCACTCACAACGTATTGGCAGTTACATTTGGAGTCCTGGGTAACATCATAT 248
Query 178 CATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGGATATGCAAGAAGAAATCAA 237
| ||| |||| |||||||| |||||||| || |||||| | || |||||||| ||||| |
Sbjct 249 CGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAAAAATCGA 308
Query 238 CCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTTAGCGCGATGCTTTGGATTT 297
||||| ||| | || |||||||| || ||||| || |||||||||||||| |||||||
Sbjct 309 TAGAAGGTTTTGAATCACTTCCCTACGTGTCAGCCCTCTTTAGCGCGATGCTATGGATTT 368
Query 298 ACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATCACCATAAACGCTGTTGGAT 357
|||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 369 ACTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTTCTCATTACCATAAACGCTGTGGGAT 428
Query 358 GCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTATGCTAACAAGAAAACTAGAA 417
|| |||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||
Sbjct 429 GCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAAGCTAGAA 488
Query 418 TATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTT-TTGGGTTTTGCTGCCATTGTTCTT 476
|||| |||||||| |||||||| |||||||| ||| |||||||||||||| ||| ||||
Sbjct 489 TATCAACTTTGAAGGTTCTTGGGCTCTTGAA-TTTCTTGGGTTTTGCTGCTATTATTCTC 547
Query 477 GTCTGCGAGCTCTTAACCGAAGGTTCG-ACACGTGAGAAAGTTCTCGGAGGGATTTGCGT 535
|||||||||||| ||||| |||| ||| || ||||||||||| || ||||||||||||||
Sbjct 548 GTCTGCGAGCTCCTAACCAAAGGATCGAAC-CGTGAGAAAGTCCTTGGAGGGATTTGCGT 606
Query 536 TGGATTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTGGTACGAAC 595
|||||||| || |||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 607 CGGATTTTCTGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATACGAAC 666
Query 596 -AAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGCGCCGTCA 654
||| |||||||||||||||||||||||| |||| |||||||||||||| |||||| | |
Sbjct 667 AAAG-AGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCCATTA 725
Query 655 CGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCGCTTCCAAATGTGTTGG 714
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 726 CGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATATTGG 785
Query 715 GCGCGTT-CTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTTAAGTACTACAAAATT 773
| ||||| || ||||| || ||||||||||| ||| | || || ||||||||||||| |
Sbjct 786 GTGCGTTTCTC-GGAGCAGTCCAAATGATTCTATACGTCATATTCAAGTACTACAAAACT 844
Query 774 CC--TA-TGGCTCA-GAAGACAGACAAATCTAAAGCCGTGTCCGATCATTCTATCGACAT 829
|| || ||| | | || |||||| || | ||| | ||||| |||||||| ||| ||||
Sbjct 845 CCACTAGTGGTTGATGA-GACAGAGAAGCCCAAAACGGTGTCGGATCATTCCATCAACAT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5