BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497252
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:160... 2170 0.0
> AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:16064503-16067437
FORWARD LENGTH=1753
Length=1753
Score = 2170 bits (1175), Expect = 0.0
Identities = 1256/1296 (97%), Gaps = 2/1296 (0%)
Strand=Plus/Plus
Query 1 GGTTCTGCAGAATTAGCTGCAGTAGGAGTATCAGTTTCTGTATTCAATTTGGTGTCGAAG 60
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 393 GGTTCTGCGGAATTAGCTGCAGTAGGAGTGTCAGTTTCTGTATTCAATTTGGTGTCGAAG 452
Query 61 CTCTTCAATGTTCCTTTGCTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CTCTTCAATGTTCCTTTACTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATT 512
Query 121 GCTGCTAAGGATGATAGTGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCTGTTTCA 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 513 GCTGCTAAGGATGATAATGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCGGTTTCA 572
Query 181 ACATCTTTAGTTCTTGCTGCTGGAGTTGGTATTGCAGAGGCGATTGCGCTATCTCTCGGC 240
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 573 ACTTCATTAGTTCTTGCTGCTGGAGTTGGTATTGCAGAGGCCATTGCGCTATCTCTCGGG 632
Query 241 TCTGATTTCTTGATGGACGTCATGGCTATACCTTTTGATTCACCAATGCGGATACCAGCA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TCTGATTTCTTGATGGATGTCATGGCTATACCTTTTGATTCACCAATGCGGATACCAGCA 692
Query 301 GAGCAGTTCCTCAGACTTAGAGCGTATGGGGCACCACCAATTGTAGTTGCATTGGCTGCG 360
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 693 GAGCAGTTCCTCAGACTTCGAGCGTATGGTGCACCACCAATTGTTGTTGCATTGGCTGCG 752
Query 361 CAAGGAGCTTTTCGAGGTTTCAAAGACACAACAACGCCTCTATATGCCGTTGTTGCAGGG 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 753 CAAGGAGCTTTTCGAGGTTTCAAGGACACAACAACGCCTCTATATGCCGTTGTTGCGGGG 812
Query 421 AATGTTCTTAATGCGATATTAGATCCAATCCTGATATTTGTCCTTGGTTTTGGTATCTCT 480
||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 813 AATGTACTTAATGCGGTATTGGATCCAATCCTGATATTTGTCCTTGGTTTTGGTATCTCT 872
Query 481 GGTGCTGCAGCTGCTACCGTGATTTCTGAATACTTGATTGCATTTATTCTTCTGTGGAAG 540
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 873 GGTGCTGCGGCTGCTACTGTGATTTCTGAATACTTGATTGCATTTATTCTTCTATGGAAG 932
Query 541 TTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCAACCAGTAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCAACCAGTAC 992
Query 601 CTCAAATCAGGTGGGCTTCTGATTGGTAGAACGGTGGCTTTGCTTGTGCCATTCACATTA 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 993 CTCAAATCAGGTGGGCTTCTCATTGGTAGAACGGTGGCTTTGCTTGTGCCATTCACATTA 1052
Query 661 GCTACTTCGTTAGCAGCTCAAAATGGACCCACTCAAATGGCTGGCCATCAAATCGTCTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GCTACTTCGTTAGCAGCTCAAAATGGACCCACTCAAATGGCTGGCCATCAAATCGTCTTG 1112
Query 721 GAAGTCTGGTTGGCTGTCTCTTTACTCACCGATGCTTTAGCCATTGCTGCACAGAGTCTT 780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GAAATCTGGTTGGCTGTCTCTTTACTCACCGATGCTTTAGCCATTGCTGCACAGAGTCTT 1172
Query 781 CTTGCCACCACTTTCTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTATCTTCGGAGTC 840
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1173 CTTGCCACCACTTACTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTCTCTTCGGAGTC 1232
Query 841 CTTCAAGTAGGATTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCACTTTCGAA 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CTTCAAGTAGGTTTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCACTTTCGAA 1292
Query 901 CCATTTTCAAGCTTATTCACAACGGATTCAGAAGTTCTAAAGATTGCTTTGTCAGGGACC 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1293 CCATTTTCAAGCTTATTCACAACGGATTCAGAAGTTTTAAAGATTGCTTTGTCAGGGACC 1352
Query 961 TTGTTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATGGGCTTTAT 1020
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1353 TTATTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATGGGCTCTAT 1412
Query 1021 TATGGTGTCTCTGACTTTGGATTTGCCGCCTATTCTATGGTGATTCTCGGATTAATATCT 1080
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 1413 TATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGGTGATTGTCGGATTCATATCT 1472
Query 1081 TCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGACTGGTTTA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGACTGGTTTG 1532
Query 1141 TTCCTCTTCATGGCATTGCGGTTGGTTGCCGGAGCCTGGAGATTGGGGACAAGAACCGGT 1200
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1533 TTCCTCTTCATGGCGTTGCGGTTGGTTGCTGGAGCCTGGAGATTGGGGACAAGAACCGGT 1592
Query 1201 CCATGGAAAATGCTGTGGTCTGCTCCAGAGAAGCCAGAATGA-GACGGATCGCTGTTTTT 1259
|||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1593 CCATGGAAAATGCTATGGTCTGCTCCAGAGAAGCCAGAATGAAG-CGGATCACTGTTTTT 1651
Query 1260 TGCGGTATGATGCGTGACTCTTAAGTTAAGATAAAT 1295
||||||||||||||||||||||||||||||||||||
Sbjct 1652 TGCGGTATGATGCGTGACTCTTAAGTTAAGATAAAT 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5