BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497253
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43290.1 | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding prot... 1227 0.0
> AT5G43290.1 | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding protein
49 | chr5:17371838-17373201 REVERSE LENGTH=1092
Length=1092
Score = 1227 bits (664), Expect = 0.0
Identities = 813/886 (92%), Gaps = 6/886 (1%)
Strand=Plus/Plus
Query 41 ctctctctctccctctccccctctcCACCTGCTCGTGTAAGTTTTCTTGTTCCCATACTC 100
||| ||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||||
Sbjct 57 CTCCCTCTCCCCCTCTCCCCCTCACCACCAGCTCGCATAAGTTTTCTTGTCCCCATACTC 116
Query 101 ATATGGCAGAAAAAGGTTCTCAGTGGACAAGAAGGTGTGGAAACGACGCCGTTGAAGATA 160
|||||| |||| |||||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 117 ATATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGAAACAACGCCGTTGAAGATC 176
Query 161 TTTTTGTTAATGAGCCTCCTCTATTCTTTCTTTCTCAAGAACAACATC--AT--A--GGC 214
||||||| ||||||| ||||| |||||||| ||||||| ||||||| || | |||
Sbjct 177 CTTTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGACCAACATCATATGCATGGGC 236
Query 215 TCATGCCATATGAAGATTCCATTACCAACAAGTTTGTCACATCAACACTTTACTCCGGTC 274
|||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct 237 TCATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACATCAACACTTTACTCCGGTC 296
Query 275 CGCGAATCCAAGATATCGCAAACGCTCTGGTCTTGGTTGAACCCCTGTCCCACCCAGTCC 334
| |||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 297 CACGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAACCCCTGACCCACCCAGTCC 356
Query 335 GGGAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGTACTTTGAACAAGGTGGATA 394
| |||||||| |||||||| ||||| | ||||||||||||||||||| |||||||||||
Sbjct 357 GAGAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGTACTTTGAGCAAGGTGGATA 416
Query 395 AGTACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGTGATGATGGATACAAATGGA 454
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 417 GGTACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGTGATGATGGATACAAATGGA 476
Query 455 GAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCGAGGAGTTATTACAAGTGCA 514
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 477 GAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCAAGGAGTTATTACAAGTGCA 536
Query 515 CAAACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCAATTGATGAGCCTAACACAT 574
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 537 CAAACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCAATTGATGAGTCTAACACAT 596
Query 575 ATATCATCACCTACGAAGGTTTCCACTTTCACTATACTTACCCTTTCTTCCTACCCGATA 634
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 ATATCATTACCTACGAAGGTTTCCACTTCCACTATACTTACCCTTTCTTCCTACCCGATA 656
Query 635 AGACACATCAATGGCCCAATaaaaaaaCGAAAATACATAAATATTATGCTCAAGAGATGA 694
|||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 657 AGACACGTCAATGGCCCAATAAAAAAACGAAAATACATAAACATAATGCTCAAGATATGA 716
Query 695 ACAAAGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAATTAGGTGAGCCCGCCAACC 754
||||| |||||||||||||||||| ||||||||||| ||||||||||||| | ||||||
Sbjct 717 ACAAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAATTAGGTGAGCTCACCAACC 776
Query 755 AAAATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTAAATCTCGAAGATGGATTGT 814
||||||| |||||| |||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 777 AAAATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCAAATCTCGAAGAGGGATTGT 836
Query 815 TTTTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTAGAAGATGTGGTGGCTCCAG 874
|||| ||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| |
Sbjct 837 TTTTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTAGAAGATGTGGTAGCTCCGG 896
Query 875 CAATGAAAAATATTCCGACCAAGGACAGTGTTTTGACAGCCTCTTG 920
|||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 897 CAATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCTTCTTG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44959561565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5