BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497255
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39210.1 | Symbols: | Major facilitator superfamily protein... 1555 0.0
> AT2G39210.1 | Symbols: | Major facilitator superfamily protein
| chr2:16366157-16368275 REVERSE LENGTH=1980
Length=1980
Score = 1555 bits (842), Expect = 0.0
Identities = 927/969 (96%), Gaps = 2/969 (0%)
Strand=Plus/Plus
Query 874 GACTGTGTTTAATCCACCGGAGAGAGGAGATGACTATACAATCTTGCAAGCGTTGTTTAG 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GACTGTGTTTAATCCACCGGAGAGAGGAGATGACTATACAATCTTGCAAGCGTTGTTTAG 1069
Query 934 CGTAGACATGTTGATCTTGTTCTTAGCAACGATATGTGGTGTGGGAGGGACTTTGACGGC 993
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1070 CGTAGACATGTTGATTTTGTTCTTAGCAACGATATGTGGCGTAGGAGGGACTTTGACGGC 1129
Query 994 GATAGACAATTTGGGTCAAATCGGAGACTCGTTGGGTTACCCGAAGAGAAGCGTAAGCAC 1053
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1130 GATAGACAATTTGGGTCAAATCGGAAACTCGTTGGGTTACCCGAAGAGAAGCGTAAGCAC 1189
Query 1054 GTTTGTGTCACTCGTAAGCATATGGAATTACTATGGTCGTGTGGTTTCAGGTGTGGTCTC 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GTTTGTGTCACTCGTAAGCATATGGAATTACTATGGTCGTGTGGTTTCAGGTGTGGTCTC 1249
Query 1114 TGAGATCTTCTTGATCAAATACAAATTTCCAAGACCTTTAATGCTCACAATGGTCCTCCT 1173
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1250 TGAGATCTTCTTGATCAAATACAAATTTCCAAGGCCTTTAATGCTCACGATGGTCCTCCT 1309
Query 1174 CTTGTCCTGCGCTGGTCATCTCCTCATCGCTTTTAATGTCCCCGGTGGACTCTATGTCGC 1233
|||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1310 CTTGTCCTGCGCGGGTCACCTCCTCATCGCCTTTAATGTCCCCGGTGGACTTTATGTCGC 1369
Query 1234 ATCGGTCATCATAGGGTTTTGTTTCGGTGCGCAATGGCCGCTTCTATTTGCAATAATATC 1293
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1370 ATCGGTCATCATAGGGTTTTGTTTTGGTGCGCAATGGCCTCTTCTATTTGCTATAATATC 1429
Query 1294 CGAGATTTTCGGGCTTAAGTACTACTCGACGTTGTATAACTTCGGGTCAGTCGCGAGCCC 1353
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1430 TGAGATTTTCGGGCTTAAGTACTACTCGACATTGTATAACTTCGGGTCAGTCGCGAGCCC 1489
Query 1354 GATCGGGTCTTACTTACTCAACGTTCGGGTCGCAGGGTATTTGTACGACGTGGAGGCGGG 1413
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GATCGGGTCTTACTTGCTAAACGTTCGGGTCGCAGGGTATTTGTACGACGTGGAGGCGGG 1549
Query 1414 TAAGCAATATAAGGCATTAGGGAAAACGAGAGTAGAAGGGCAAGATTTGAATTGCATAGG 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TAAGCAATATAAGGCATTAGGGAAAACGAGAGTAGAAGGGCAAGATTTGAATTGCATAGG 1609
Query 1474 CACGTCTTGTTTTAAGTTGTCTTTTATAATAATTACTGCGGTAACTTTGTTTGGTGTATT 1533
|||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||
Sbjct 1610 CACGTCTTGTTTTAAGTTGTCTTTTATAATAATTGCCGCTGTAACTTTGTTCGGTGTATT 1669
Query 1534 GGTCTCGATGGTTTTGGTGATCCGGACCAAGAAGTTTTACAAGAGTGATATCTACAAAAA 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 GGTCTCGATGGTTTTGGTGATCCGGACCAAGAAGTTTTACAAGAGTGATATCTACAAAAA 1729
Query 1594 GTTTAGAGAAAAAGCGTTGGCTGCCGAGATGGAGATGGCAGCACCGGCTGCGGCCAGATC 1653
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1730 GTTTAGAGAAAAAGCGTTAGCTGCCGAGATGGAGATGGCAGCGCCGGCTGCAGCCAGATC 1789
Query 1654 TACCGTGGCGGAGGAAGATAAGGATGGTGTTAAAGGCAAAGTAATAGGCAAATGAGGATA 1713
||||||||| ||||||| ||||||| ||||||||||||||||||||| ||| |||| ||
Sbjct 1790 TACCGTGGCTAAGGAAGACAAGGATGATGTTAAAGGCAAAGTAATAGGAAAAGGAGGGTA 1849
Query 1714 A-CGTCTTTAGTAGATGATTGTTAAAGATACTAGATAACAAAAGATGGTCAAGTATTTTG 1772
| | | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1850 AAC-TATTTAGTAGATGATTGTTACAGATACTAGATAACAAAAGATGGTCAAGTATTTTG 1908
Query 1773 TAAACAGTTTTATATATCTCCCCAATGTGAAACCCATCTTTCATTGATAGCtttttgttt 1832
|||||| |||||||||||||| ||||||||||| |||||| ||| ||||| ||||||||
Sbjct 1909 TAAACACTTTTATATATCTCCTTAATGTGAAACCTATCTTTTATTAATAGCATTTTGTTT 1968
Query 1833 tgtttttGA 1841
|||||||||
Sbjct 1969 TGTTTTTGA 1977
Score = 1482 bits (802), Expect = 0.0
Identities = 851/875 (97%), Gaps = 1/875 (0%)
Strand=Plus/Plus
Query 1 AGCATCCCTCTCGACACATACACTTCTCTCCTAAAACCAAAAAATGGTGGCTGCAAGTCC 60
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2 AGCATCCCTCTCGACACACACACTTCTCTCCTAAAACCCAAAAATGGTGGCTGCAAGTCC 61
Query 61 CGGTGGCTCAATGAAGAGCTTAACCATCCAAATCCTAACCGGAAGATGGTTCATGTTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CGGTGGCTCAATGAAGAGCTTAACCATCCAAATCCTAACCGGAAGATGGTTCATGTTCTT 121
Query 121 TGGAAGTCTCTTAATCATGTCTACCGCTGGAGCCACTTACATGTTCGGTATCTACTCAGG 180
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 122 TGGAAGTCTCTTAATCATGTCGACAGCTGGAGCCACTTACATGTTCGGTATCTACTCAGG 181
Query 181 CGATATCAAGAAAACCTTAGGCTACGACCAAACCACTCTTAATCTCCTCAGTTTCTTCAA 240
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 CGATATCAAGGAAACCTTAGGCTACGACCAAACCACTCTTAATCTCCTAAGTTTCTTCAA 241
Query 241 AGATCTCGGAGCCAACGTTGGAGTTCTCGCGGGTCTACTCAATGAGGTGACTCCACCTTG 300
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 242 AGATCTCGGAGCCAACGTTGGAGTCCTCGCGGGTCTACTCAATGAGGTAACTCCTCCTTG 301
Query 301 GTTCATCCTCTTGATCGGAGGCATCCTTAACTTCTTTGGATACTTCATGATTTGGCTCGC 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 302 GTTCATCCTCTTGATCGGAGCCATCCTTAACTTCTTTGGATACTTCATGATTTGGCTCGC 361
Query 361 CGTCACGGAACGGATCTCGAAACCTCAAGTTTGGCACATGTGTCTCTATATCTGCGTTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CGTCACGGAACGGATCTCGAAACCTCAAGTTTGGCACATGTGTCTCTATATCTGCGTTGG 421
Query 421 AGCCAACTCCCAGTCGTTCGCTAATACCGGATCTCTCGTCACGTGCGTTAAGAACTTCCC 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AGCCAACTCGCAGTCGTTCGCTAATACCGGATCTCTCGTCACGTGCGTTAAGAACTTCCC 481
Query 481 GGAGTCACGTGGGGTTGTCTTGGGGATTCTCAAGGGCTATGTTGGTCTTAGTGGCGCCAT 540
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 482 GGAGTCACGTGGGGTTGTCTTGGGGATTCTCAAAGGCTACGTTGGTCTTAGTGGCGCCAT 541
Query 541 TATTACACAGCTCTACCGTGCCTTTTATGGTGAAGACACAAAAGAGCTCATCTTGATGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TATTACACAGCTCTACCGTGCCTTTTATGGTGAAGACACAAAAGAGCTCATCTTGATGAT 601
Query 601 TGGTTGGTTACCTGCAATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAATGAAAGT 660
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGGTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAATGAAAGT 661
Query 661 GAAGAGACAGACAAACGAACTAAAGGTGTTCTATAACTTCCTCTACATATCTCTCGGGCT 720
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 662 GAAAAGACAGACAAACGAACTAAAGGTGTTCTATAACTTCCTCTACATATCGCTCGGGCT 721
Query 721 TGCGACGTTTCTCATGGTGGTCATCATCATCAACAAACTCTCGGGCTTTACACAAAGCGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TGCGACGTTTCTCATGGTGGTCATCATCATCAACAAACTCTCGGGCTTTACACAAAGCGA 781
Query 781 GTTTGGAGGTAGCGCCGCAGTGGTGATCGTCTTGCTTCTTTTGCCCATCATAGTCGTCAT 840
|||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 782 GTTTGGAGGTAGCGCCGCGGTAGTGATCGTCTTACTTCTTTTGCCCATTATAGTCGTCAT 841
Query 841 CTTGGAAGAGAAGAAGCTT-GGAGGGAGAAACAAG 874
||||||||||||||||||| ||| |||||||||||
Sbjct 842 CTTGGAAGAGAAGAAGCTTTGGAAGGAGAAACAAG 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91113989175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5