BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497258
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32100.1 | Symbols: ATOFP16, OFP16 | ovate family protein 16... 736 0.0
> AT2G32100.1 | Symbols: ATOFP16, OFP16 | ovate family protein
16 | chr2:13647852-13648785 FORWARD LENGTH=934
Length=934
Score = 736 bits (398), Expect = 0.0
Identities = 528/588 (90%), Gaps = 20/588 (3%)
Strand=Plus/Plus
Query 184 CACCA-AA-CTCGGTCAAGAGAATTCTCGGATAATTACGACGATGCCACTGTCACGTCGA 241
||||| || | ||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 356 CACCAGAACCCCGGTCAAGAGAATTCTCTGATAATTACGATGATGCCACTATCACGTCGA 415
Query 242 CAaagaagaagaagaagaagaaTGATGATACTGCCGTG---ACTACTACTACGAGGCTTA 298
||||||||||||| |||||| | |||||| | ||||| |||||||||||||||||||
Sbjct 416 CAAAGAAGAAGAAAAAGAAGGTTTATGATAATTCCGTGACTACTACTACTACGAGGCTTA 475
Query 299 TAAGCGGAGGAACCGCCGTGACGCAAAACGTGGACTCACCGGATCCGTTAACTGACTTCC 358
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 476 TAAGCGGAGGAACCGCCGTAACTCAACACGTGGACTCACCGGATCCGTTAACTGACTTCC 535
Query 359 GGCGATCAATGCAAGAGATGATTGACGCCGCCATTGACGCCGGAGAACTTAGCCGTGATC 418
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 536 GGCGATCCATGCAAGAGATGATTGACGCCGCCATCGACGCCGGAGAACTTAGTCGTGATC 595
Query 419 CGAACGATGGTTACGATTTCTTGGATGAGCTCCTACTCACTTATCTCTCCTTGAATCCAA 478
||||||| |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 596 CGAACGACGGTTACGATTTCTTGGATGAACTGCTACTCACTTATCTCTCTTTAAATCCAG 655
Query 479 CCGACACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCTG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 CCGACACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCGG 715
Query 539 AAGAACGCCGAATATGCTGACGTGGCGGCAGCCGCCGGGATAAAAA-----CGCCCGTGT 593
|||||||||| |||||||||||||| | |||||||||||||||| | ||||||
Sbjct 716 AAGAACGCCGGATATGCTGACGTGGTGATGGCCGCCGGGATAAAAAAAAAACTCCCGTGC 775
Query 594 ATTGAATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCTCTTTTTCCATTGTAA 653
| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 776 AATGAATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCT-TTTTTCCA----A- 829
Query 654 TTTGTACGTCTTCATGGAAGAGTAGCTAAGCAACCCa-aaaaaaTTAATACTGACAATTT 712
| ||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||
Sbjct 830 T--GTACGTCTTCATGGAAGAGTAACTAAGCAAACCAGAAAAAATTATTACTGACAATTT 887
Query 713 TATATTTTGTATGttttttttttAATTATTGAATGATGAAAAGGATAG 760
|||||||||||||||| || ||| ||||||||||| |||||||||
Sbjct 888 CATATTTTGTATGTTTTATTAA-AATAATTGAATGATGCAAAGGATAG 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5