BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497265
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1059 0.0
> AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:16791098-16792090 FORWARD
LENGTH=828
Length=828
Score = 1059 bits (573), Expect = 0.0
Identities = 680/732 (93%), Gaps = 5/732 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCG 60
Query 61 TGGTCGTTACAATCTGAGTCCCCCGATTCTGATTGGAGCCGGTTTAATCTTGGCTTCTCT 120
||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGGTCACTACAATCTGAGTCCTCTGATTCTGATTGGAACCGGTTTAATCTTGGCTTCTCT 120
Query 121 TTTTCATCCTCCGGT--T-ATTTCCCGGCGGATGATTGTGTCGGTGGGATTGAAAAAGCA 177
| ||| |||| |||| | |||||||||| |||||||||||||||||||| ||||||||
Sbjct 121 TCTTCCTCCTTCGGTGGTAATTTCCCGGCTGATGATTGTGTCGGTGGGATCGAAAAAGCT 180
Query 178 GAGTCACTTTCAAGAAGCCACCGTCAAGCTGAGAAAAGACGCCGTGACCGGATTAATTCT 237
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 181 GAGTCACTTTCAAGAAGCCACCGTCTAGCGGAGAAAAGACGCCGTGACCGGATAAATTCT 240
Query 238 CACCTCACTGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACCTCACTGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTA 300
Query 298 TTAGCATCAGTGATAGAACAAGTGAAGGAGCTCAAACAAAAAGCAACAGAATCACCAAGC 357
|||||| ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |
Sbjct 301 TTAGCAACAGTGATTGAACAAGTGAAAGAACTCAAACAAAAAGCAGCAGAATCACCAATC 360
Query 358 TTCGAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTTCAGCTTGAAACCATCTCTGAC 417
||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 361 TTCCAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTACAGCCTGAAACTATCTCTGAC 420
Query 418 TTTGAATCAAATACAAATACAATCATCTTCAAAGCTTCGTTTTGCTGCGAAGATCAACCC 477
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TTTGAATCAAACACAAACACAATCATCTTCAAAGCTTCTTTTTGCTGCGAAGATCAACCC 480
Query 478 GAAGCAATCTCAGAGATCATTAGAGTTCTCACAAAGCTA-AATCTCGAAACAATCCAAGC 536
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 481 GAAGCAATCTCAGAGATTATTAGAGTTCTCACAAAGCTTCAA-CTCGAAACAATCCAAGC 539
Query 537 TGAAATCATGTGTGTAGGAGAAAGAATGAGAATCAATTTCATCCTAAAAGATAGCAACTG 596
|| || || | ||| || | |||||||||||||||||||||| ||||||||||||||||
Sbjct 540 AGAGATAATCTCTGTTGGGGGAAGAATGAGAATCAATTTCATCTTAAAAGATAGCAACTG 599
Query 597 CAATGAGACGACAAACATAGCTGCATCAGCAAAAGCTTTGAAGCAATCTCTCTGCGCTGC 656
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 600 CAATGAGACTACAAACATAGCTGCTTCAGCAAAAGCTTTGAAGCAATCTCTCTGCTCTGC 659
Query 657 GTTAAACCGAATCACATCTTCTTCTTCAACTACTTCTTCAGTTTGCAGAATCAGAAGCAA 716
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 660 GTTAAATCGAATCACATCTTCTTCTACGACTACTTCTTCAGTTTGCAGAATCAGAAGTAA 719
Query 717 AAGACAAAGATG 728
|||||| |||||
Sbjct 720 AAGACAGAGATG 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5