BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497266
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40190.1 | Symbols: LEW3 | UDP-Glycosyltransferase superfami... 2464 0.0
> AT2G40190.1 | Symbols: LEW3 | UDP-Glycosyltransferase superfamily
protein | chr2:16785194-16787530 FORWARD LENGTH=1703
Length=1703
Score = 2464 bits (1334), Expect = 0.0
Identities = 1491/1565 (95%), Gaps = 17/1565 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCTGCTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ATGGCGATCTACTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 98
Query 61 TTATCACTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTGGGATTCTTCCAT 120
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 99 TTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCCAT 158
Query 121 CCGTACACGAATGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCAGTCAAAGCCATC 180
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 159 CCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCATT 218
Query 181 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 278
Query 241 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAATCTCCTCCTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 279 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAGTCTCCTCCTAAG 338
Query 301 GTGATTTATCTAAGCAAAAGGAAATGGATTGAAGAGAGGACTTACCCACATTTCACAATG 360
|||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 339 GTGATTCATCTAAACAAAAGGAAATGGATTGAAGAGAGTACTTACCCACATTTTACAATG 398
Query 361 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCAAGTTCACTCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 399 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCATGTTCACTCCT 458
Query 421 TTGTATTTCCTTGACACTAGTGGATATGC-TTTCACATATCCTCTTGCTCGGATCTTTGG 479
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 459 TTGTATTTCCTTGACACTAGTGGATATGCGTTT-ACATATCCTCTTGCTCGGATCTTTGG 517
Query 480 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 577
Query 540 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 637
Query 600 TACTTGCAAGTTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TACTTGCAAATTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 697
Query 660 TACTCATCTAGCTATGGTTAACTCTTCGTGGACAAAGTCACATATCGAAGTGCTCTGGAG 719
||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 698 TACTCATTTAGCTATGGTTAACTCTTCGTGGACTAAGTCCCATATCGAAGTGCTTTGGAG 757
Query 720 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCATT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 758 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCGTT 817
Query 780 CCCACTTGAAAGATCTTCAGATCCTCCAAAAATCATATCCGTTGCTCAGTTTCGTCCTGA 839
|| |||||| |||| || |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 818 TCCTCTTGAACGATCATCTGATCCTCCTAAAATCATATCAGTTGCTCAATTTCGTCCTGA 877
Query 840 GAAGGCTCATATGCTTCAGCTTGAGGCCTTTGCACTAGCCTTGGAGAAGTTAGATGCAGA 899
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 878 GAAGGCTCATATGCTTCAGCTTGAGGCCTTTTCACTAGCCTTAGAGAAGCTAGATGCAGA 937
Query 900 CGTCCCTCGACCCAAGCTCCAATTTGTGGGAAGTTGTAGAAACAATTCAGATGAAGAACG 959
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CGTCCCTAGACCCAAGCTCCAATTTGTGGGAAGTTGTAGAAACAATTCAGATGAAGAACG 997
Query 960 TCTGCAGAAATTGAAAGACAGAGCAGTTGAACTAAAAGTGGATGGAGACGTGGAATTCTA 1019
||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 998 TCTGCAGAAATTGAAAGACAGAGCAGTGGAACTAAAAGTAGATGGAGACGTGCAATTCTA 1057
Query 1020 TAAAAACGCCATGTACAGAGAACTAGTGGAACTGCTAGGAAATGCAGTTGCAGGAATGCA 1079
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1058 TAAAAATGCCATGTACAGAGAACTAGTGGAACTGTTAGGAAATGCAGTTGCAGGACTGCA 1117
Query 1080 TGGGATGATAGATGAACACTTTGGGATTAGCGTTGTTGAGTACATGGCGGCTGGTGCGAT 1139
|||||||||||||||||||||||| || || ||||||||||||||||| |||||||| ||
Sbjct 1118 TGGGATGATAGATGAACACTTTGGTATAAGTGTTGTTGAGTACATGGCTGCTGGTGCAAT 1177
Query 1140 CCCAATAGCTCACAACTCAGCTGGACCCAAAATGGACATCGTGTTGGAAGAAGACGGACA 1199
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1178 CCCAATAGCTCACAACTCAGCTGGACCTAAAATGGACATTGTGTTGGAAGAAGACGGACA 1237
Query 1200 AAGAACCGGGTTTCTTGCTGAGACTGTGGAGGAATACGCCGAAGCGATCCTTGAGATTGT 1259
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1238 AAAAACCGGGTTTCTTGCTGAGACTGTGGAGGAATACGCTGAAGCGATCCTTGAGATTGT 1297
Query 1260 GAAGATGAGTGAAAAAGAGAGGATTAAAATGGCTGAATCTGCTAGAAAACGAGCGGTAAG 1319
|||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1298 GAAGATGAATGAAACAGAGAGGCTTAAAATGGCTGAATCTGCTAGAAAACGAGCGGCAAG 1357
Query 1320 GTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACTGCGATTCAACCCATTTTCACTGG 1379
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1358 GTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACTGCGATTCGACCCATTTTCACAGG 1417
Query 1380 TCCTCTTAAATGACAGTTCT----C--T--------GCTTACTGCACTAGCTTTTAAACG 1425
|||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1418 TCCTCTTAAATGACAGTTCTTAAACCCTCAAAACCTGCTTACTGCACTAGCTTTTAAACG 1477
Query 1426 CACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTTTATAGtttttttttttttAGTTC 1485
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1478 CACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTTTATAGATTTTTTTTTTTAA-TTC 1536
Query 1486 TGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGTTTGATCAAAAGAAACGAGTAAGA 1545
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1537 TGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGTTTGGTCAAAAGAAACGAGTAAGA 1596
Query 1546 TGTTC 1550
| |||
Sbjct 1597 TCTTC 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5