BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497269
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65620.1 | Symbols: | Zincin-like metalloproteases family p... 2250 0.0
AT5G10540.1 | Symbols: | Zincin-like metalloproteases family p... 1279 0.0
> AT5G65620.1 | Symbols: | Zincin-like metalloproteases family
protein | chr5:26221932-26225903 FORWARD LENGTH=2514
Length=2514
Score = 2250 bits (1218), Expect = 0.0
Identities = 1360/1426 (95%), Gaps = 19/1426 (1%)
Strand=Plus/Plus
Query 1 ACGCTTGTAATAGCAAACATGTTAATGGCGACTCCAACGTCTCGAGCGTCTCTCAATCTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2 ACGCTTGTAATAGCAAACATGTTAATGGCGACTCCAACGTCTCGAGCCTCTCTCAATCTT 61
Query 61 CTTCGTCGTTCACCAAAACCCAAATATTTCTCATCTTCTTCTTGTCAATTTGGTCCCTCA 120
|||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 62 CTTCGTCGATCGCCAAAACCCAAATATTTCTCATCTTCTTCTTGTCATTTTCGTCCCTCA 121
Query 121 ACTTTTCGAAAATCATATCCTTGCCCCAtctggtcttcttctttctctttctgtctccct 180
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 122 ACTTTTCGTAAATCATATCCTTGCCCCATCTGGTCTTCTTCTTTCTCTTTTTGTCTCCCT 181
Query 181 cctcctagatccactacctccacctctctctcctcct-c-c-ttccgtcccttctcctct 237
|||||||||||||| || ||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 182 CCTCCTAGATCCACCACTTCCACCTCTCTCTCCTCCTCCTCTTTCCGCCCCTTCTCCTCT 241
Query 238 cctccGTCTATGTCTTCCGCCGCCGCTGCCGCCGTAGACTCTGTTATCTCCGAGGAGACT 297
|||||||| |||||||||||||||||||||||||| || || || ||||||| ||||||
Sbjct 242 CCTCCGTCCATGTCTTCCGCCGCCGCTGCCGCCGTGGAATCCGTCGTCTCCGACGAGACT 301
Query 298 CTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATGCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATGCC 361
Query 358 AGTCATGTTCGTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGAGGAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AGTCATGTTCGTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGAGGAG 421
Query 418 CTAGAGAAATCTGTGGAGCCATCGTGGCCAAATCTGGTTGAACCTTTAGAGAAAATCGTT 477
||||||||||||||||||||| | |||||||| ||||| ||||| |||||||||||||||
Sbjct 422 CTAGAGAAATCTGTGGAGCCAACATGGCCAAAACTGGTGGAACCATTAGAGAAAATCGTT 481
Query 478 GATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAAGCTGTTAAGGACACACCT 537
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 482 GATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAGGCTGTCAAGGACACACCT 541
Query 538 GAGCTTCGTGCTGCCATTGAAGACGTTCAGCCAGAGAAGGTGAAGTTCCAGCTCAGATTG 597
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 542 GAGCTACGTGCTGCCATCGAAGACGTTCAGCCAGAGAAAGTGAAGTTCCAGCTCAGGTTG 601
Query 598 GGACAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCA 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCA 661
Query 658 TCTCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGGCAATATGTTTTCAGCTCAAATAAAG 717
|| |||||||||||||||||||||||||| | | | |||||||||||||
Sbjct 662 TCGCTCAGTGAAGCTCGTCAACGCTTAGT---A-G----A-------AGCTCAAATAAAG 706
Query 718 GAGGCGGTTCTCATAGGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAACAAAATT 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 707 GAGGCGGTTCTCATTGGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAATAAAATT 766
Query 778 GAACAGGAACTCGAAAAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCTACAAAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 767 GAACAGGAACTCGAAAAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCAACAAAG 826
Query 838 AAATTTGAAAAGTTGATTACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTC 897
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AAATTTGAAAAGTTGATAACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTT 886
Query 898 GGGCTATTCGCACAAGCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GGGCTATTCGCACAAGCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGA 946
Query 958 CCATGGATCATTACACTAGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAGAAC 1017
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 947 CCATGGATCATTACACTGGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAAAAC 1006
Query 1018 CGTGCTCTGCGTGAGGAAGTTTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTG 1077
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGTGCTCTGCGTGAGGAAGTCTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTG 1066
Query 1078 GATAATACAGCAATTATCGACCAGATCTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTT 1137
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1067 GATAATACGGCAATTATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTT 1126
Query 1138 GGTTACAACAATTACGCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GGTTACAACAATTACGCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCA 1186
Query 1198 GCAGAGCTTTTAGAGAAGCTTCGTAGTGCATCTTGGGATGCGGCTGTTCAAGACATGGAA 1257
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1187 GCAGAGCTTTTAGAGAAGCTTCGTAGTGCATCCTGGGATGCGGCTGTTCAAGACATGGAA 1246
Query 1258 GACCTCAAGAGTTTCGCAAAGGACCAGGGTGCAGCAGAATCTGACAGTTTGACTCACTGG 1317
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||
Sbjct 1247 GACCTCAAGAGTTTCGCAAAGAACCAGGGTGCTGCAGAATCTGACAGTATGACTCATTGG 1306
Query 1318 GACACCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATATGATATTAATGAGGAAGAA 1377
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1307 GACACCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGGAAGAA 1366
Query 1378 CTACGTCCATACTTCTCACTGCCAAAGGTTATGGATG-ACTTTTCA 1422
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1367 CTACGTCCATACTTCTCACTGCCAAAGGTTATGGATGGACTTTTCA 1412
Score = 789 bits (427), Expect = 0.0
Identities = 511/548 (93%), Gaps = 20/548 (4%)
Strand=Plus/Plus
Query 1420 TCA-TTGAAATTTGCTAGTGTGGATCTTGAGCTGCACACAAAATATGTACCAGGAGGAGC 1478
||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 1975 TCAGTTGAAATTTGCCAGTGTTGATCTTGAGCTGCACACAAAATACGTACCAGGAGGACC 2034
Query 1479 AGAGTCCATCTATGACGTAGATCAAAGGGTATCAGTGAAAACCCAAGTTATCCCTCCACT 1538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2035 AGAGTCCATCTATGACGTAGATCAAAGGGTATCAGTAAAAACCCAAGTTATCCCTCCACT 2094
Query 1539 TCCTGAGGATAGATTCCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGATATGCAGCTGG 1598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 TCCTGAGGATAGATTTCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGATATGCAGCTGG 2154
Query 1599 ATATTACAGTTACAAGTGGGCAGAAGTTTTGTCTGCAGATGCATTTTCAGCATTTGAAGA 1658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2155 ATATTACAGTTACAAGTGGGCAGAAGTTTTGTCTGCTGATGCATTTTCAGCATTTGAAGA 2214
Query 1659 CGCTGGACTAGATGACATCAAGGCTGTGAAAGAAACAGGACAGAGATTCAGAGACACCAT 1718
|||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2215 CGCTGGACTAGACGACATCAAGGCTGTTAAAGAAACAGGACAGAGATTCAGAAACACCAT 2274
Query 1719 ACTTGCACTTGGAGGAGG-AAGAGCGCCTCTTAAGGTGTTTGTTGAGTTTAGAGGACGAG 1777
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2275 ACTTGCACTTGGAGGAGGGAA-AGCGCCTCTTAAGGTGTTTGTTGAGTTTAGAGGACGAG 2333
Query 1778 AACCTTCACCAGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTT 1837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 AACCTTCACCCGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTT 2393
Query 1838 AACTCTTATAT--T--TCACAACATTTGGCAACTTT-ATAA-ACATTTATATAAGATGAA 1891
||||||||||| | ||||||||||||| |||||| | || ||||||||| | |||| |
Sbjct 2394 AACTCTTATATAATCCTCACAACATTTGGAAACTTTGA-AAGACATTTATA-A-GATGGA 2450
Query 1892 AAAAGATCtttt-ttttttAATATGGCAACCATTTACATCTCTCAACTACTACATTGCAT 1950
||| | ||||| |||||||||||| ||||||||||||||| || ||| | ||||||
Sbjct 2451 AAATCAACTTTTCTTTTTTAATATGCCAACCATTTACATCT---AA-TAC-A--TTGCAT 2503
Query 1951 TGATTTCT 1958
||||||||
Sbjct 2504 TGATTTCT 2511
> AT5G10540.1 | Symbols: | Zincin-like metalloproteases family
protein | chr5:3328065-3334971 FORWARD LENGTH=2852
Length=2852
Score = 1279 bits (692), Expect = 0.0
Identities = 986/1126 (88%), Gaps = 27/1126 (2%)
Strand=Plus/Plus
Query 295 ACTCTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGAT 354
||||| |||||||||||||| |||||| | || || |||||||||||||| |||||||||
Sbjct 70 ACTCTCTCCTCGAATCCTCTATTGCAGAATTTTGACTTCCCTCCGTTTGACTCCGTTGAT 129
Query 355 GC-CAGTCATGTTC-GTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGG 412
|| || |||| || | ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 130 GCTCA-CCATG-TCAGACCTGGGATTCGTGCTCTGTTGCAGCAGCTCGAAGCTGAATTGG 187
Query 413 AGGAGCTAGAGAAATCTGTGGAGCCATCGTGGCCAAATCTGGTTGAACCTTTAGAGAAAA 472
|| ||||||| ||| |||| ||||| || |||||||| || || || || |||||||| |
Sbjct 188 AGCAGCTAGAAAAAGCTGTAGAGCCTTCATGGCCAAAACTAGTGGAGCCATTAGAGAAGA 247
Query 473 TCGTTGATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAAGCTGTTAAGGACA 532
| ||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 248 TTATTGATCGGTTATCTGTTGTTTGGGGAATGATCAATCATCTTAAGGCTGTCAAGGACA 307
Query 533 CACCTGAGCTTCGTGCTGCCATTGAAGACGTTCAGCCAGAGAAGGTGAAGTTCCAGCTCA 592
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 308 CACCTGAGCTTCGTGCTGCCATTGAAGAAGTTCAGCCGGAGAAGGTGAAGTTCCAGCTCA 367
Query 593 GATTGGGACAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATT 652
| |||||||| ||||| || ||||||||||| ||||| |||||||| |||||||| || |
Sbjct 368 GGTTGGGACAGAGCAAACCCATTTACAATGCATTTAAGGCTATTCGAGAATCTCCAGACT 427
Query 653 GGTCATCTCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGGCAATATGTTTTCAGCTCAAA 712
|| | | ||| || || || || || | || || | | || | || ||| ||||
Sbjct 428 GG--A-AT-TCATTG-AG--CG--AA-GC-TCGT-CAACG-ATTA-G-TTGAAGCCCAAA 472
Query 713 TAAAGGAGGCGGTTCTCA-TAGGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAAC 771
|||||||||||||||| | | |||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 473 TAAAGGAGGCGGTTCTGAGT-GGTATTGCTCTTGAAGATGATAAGAGGGAAGAATTTAAC 531
Query 772 AAAATTGAACAGGAACTCGAAAAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCT 831
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 532 AAAATTGAACAGGAACTTGAAAAACTTTCTCATAAGTTTTCTGAGAATGTTTTGGACGCT 591
Query 832 ACAAAGAAATTTGAAAAGTTGATTACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCT 891
|||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct 592 ACAAAGAAGTTTGAAAAGTTGATAACAGACAAGAAAGAGATTGAGGGGTTGCCACCATCT 651
Query 892 GCTCTCGGGCTATTCGCACAAGCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAG 951
|| || || | ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 652 GCACTTGGATTGTTCGCACAAGCAGCTGTTTCCAAGGGCCATGAAACTGCAACTGCTGAC 711
Query 952 AATGGACCATGGATCATTACACTAGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCT 1011
| |||||||||| |||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 712 ACTGGACCATGGCTCATTACACTCGATGCTCCTAGTTATCTTCCCGTTATGCAACATGCC 771
Query 1012 AAGAACCGTGCTCTGCGTGAGGAAGTTTACCGTGCTTACCTATCTCGTGCCTCTTCTGGC 1071
|| ||||| |||||||| |||||||| |||||||||||| |||| ||||||||||| ||
Sbjct 772 AAAAACCGAGCTCTGCGCGAGGAAGTCTACCGTGCTTACTTATCCCGTGCCTCTTCGGGT 831
Query 1072 GATTTGGATAATACAGCAATTATCGACCAGATCTTGAAGCTTCG-CTTGGAAAAAGCTAA 1130
||||| ||||||||||||||||||||||| |||||||||||||| | ||||||| |||||
Sbjct 832 GATTTAGATAATACAGCAATTATCGACCAAATCTTGAAGCTTCGAC-TGGAAAAGGCTAA 890
Query 1131 GCTTCTTGGTTACA-ACAATTACGCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTG 1189
|||||||||||||| | ||||| ||||||||||||||||| | ||||||||||||||| |
Sbjct 891 GCTTCTTGGTTACAGA-AATTATGCTGAGGTAAGCATGGCCACGAAAATGGCTACTGTGG 949
Query 1190 AGAAAGCAGCA-GAGCTTTTAGAGAAGCTTCGTAGTGCATCTTGGGATGCGGCTGTTCAA 1248
||||||||| | ||||| |||| |||||||| ||||| || |||||| |||||||||||
Sbjct 950 AGAAAGCAG-ATGAGCTACTAGAAAAGCTTCGCAGTGCTTCATGGGATCCGGCTGTTCAA 1008
Query 1249 GACATGGAAGACCTCAAGAGTTTCGCAAAGGACCAGGGTGCAGCAGAATCTGACAGTTTG 1308
||||| |||||||| |||||||| || ||| |||| ||||| ||||| |||||||||||
Sbjct 1009 GACATAGAAGACCTTAAGAGTTTTGCGAAGAACCAAGGTGCTGCAGAGGCTGACAGTTTG 1068
Query 1309 ACTCACTGGGACACCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATATGATATTAAT 1368
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1069 ACTCACTGGGACATCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAAT 1128
Query 1369 GAGGAAGAACTACGTCCATACTTCTCACTGCCAAAGGTTATGGATG 1414
||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct 1129 GAGGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATG 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5