BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497273
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits t... 1666 0.0
> AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits
to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa
- 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes
- 14 (source: NCBI BLink). | chr2:13997382-13999828 REVERSE
LENGTH=1191
Length=1191
Score = 1666 bits (902), Expect = 0.0
Identities = 1047/1115 (94%), Gaps = 18/1115 (2%)
Strand=Plus/Plus
Query 1 TAACATTATGGATCCGCCACCGTCGATTTAATCTCCGGGAAGCTTTGTGGAAAGATGTCG 60
||||| | |||||||||||||||||| ||||||||||| |||| | || |||||||||||
Sbjct 61 TAACAATCTGGATCCGCCACCGTCGAATTAATCTCCGGAAAGC-TCGTCGAAAGATGTCG 119
Query 61 ATGGGAAGCGACACGACGTGGGTTGGGAAGAAACCGATCAGGCGCATCGGCGGATTGTCT 120
|||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 120 ATGGGAGGCGACACGACGTGGGTTGGGAAGAAGCCGATCAGACGCATCGGTGGATTATCT 179
Query 121 GATGCTCTCTCTATCGCCTCCGATCTTGGTTTCGCCGTCGCTCCTCCTCCGTCGCATGAA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 180 GATGCTCTCTCTATCGCCTCCGATCTCGGTTTCGCCGTCGCTCCTCCTCCGTCGCAGGAA 239
Query 181 GAATTACAAAGCTTGGCGACTTCGAATGGCGAAAAAGGTGACGATTTGATTAGGGTTTTG 240
|||||||||||||| ||| |||||||||| |||| |||||| |||||||| ||||| |||
Sbjct 240 GAATTACAAAGCTTTGCGTCTTCGAATGGGGAAAGAGGTGATGATTTGATAAGGGTATTG 299
Query 241 AGAGAGTTATCTGCTGTTCAAAGGAAAATTGCAGACTTGCAGGTCGAGCTTCAAGGGAGG 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGAGTTATCTGTTGTTCAAAGGAAAATTGCAGACTTGCAGGTCGAGCTTCAAGGGAGG 359
Query 301 AAGGATGATAAAAATGTGGCGCATTTGACTCAT-TTGAGTGAAATGCAAAAGAAAATCGA 359
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 360 AAGGATGATAAAAATGTGGCGCATTTGACTCATGTTG-GTGAAATGCAAAAGAAAATCGA 418
Query 360 GACTTTGTCAAGGATTACTCAGATATTGAAAGATGTTATACAAAACAAGGATCGCATCAT 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 GACTTTGTCAAGGATTACTCAAATATTGAAAGATGTTATACAAAACAAGGATCGCATCAT 478
Query 420 TGCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAATATCAGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAATATCAGAA 538
Query 480 ACAATTCTCAGAGTTGCTAATGAAAGCCACCAGTGATTATGGTGCCTTAACAGCATCCGT 539
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 539 ACAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAGCATCCGT 598
Query 540 GTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGGAAATGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGGAAATGCT 658
Query 600 GCGTCCAATACCCGTGGCACTAGCGTCATGCACAAGATTCTTTGAGGCAATGTCTGCGAT 659
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 659 GCGTCCAATACCTGTGGCACTAGCGTCATGCACGAGATTCTTTGAGGCCATGTCTGCGAT 718
Query 660 GAGAGAATCATTCGCGACTCTTCAGGACCTTCGAGTTGGCAACTCTGCAGTTTCTTTACC 719
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 719 GAGAGAATCATTCGCGACTCTTCAAGAGCTTCGAGTTGGTAACTCTGCAGTTTCTTTACC 778
Query 720 AACTACACCAGGAGGTAACGAAATGACACATAGGGGCTCAGATTGTGTGACTCCACCTCA 779
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 779 AACAACACCAGGAGGTAACGAAATGACACATAGAGACTCAGATTGTGTGACTCCACCTCA 838
Query 780 AGGGAGAATAGAGTCAAGCTTCGACGACTTAGCTGTTCATAACACAAGGAGACAAAACAA 839
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 839 AGGGAGGATAGAGTCAAGCTTCGACGATTTAGCTGTTCATAAAACAAGGAGACAAAACAA 898
Query 840 TGATCAAAATgaagaagaagaagaagaaga------------TGGTAATAACAATTCGAA 887
|||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 899 TGATCAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAATAACAATGGGAA 958
Query 888 CAGGAGACTATCTTGGCCTCCTTCTGTAAAAAAGAGTAGCGTTTAAACAATGGCTTTTGT 947
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 959 CCGGAGACTATCTTGGCCTCCTTCTGTAAAAAAGAGTAGCGTTTAAACAGTTGCTTTTGT 1018
Query 948 TATTTGCTTGATCTGTTTAATATCGATCGTGTTTTGTTTTATCAGCATTAGTGTCCTTTA 1007
||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1019 C-TTTGCTTGAGCTTTTTAATATCGATCGTGTTTTGTTTCATCAGCATTAGTGTTCTTTA 1077
Query 1008 TGGATTTACTTATTTCTATTTGAAA-TCTTTGAGTGAAACTTAAA-CAGTGTATATTTTG 1065
||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1078 TGGATTTACTTATTTCTATTTGATAGTCTTTGAGTGAAACTTAAAACAGTGTATATTTTG 1137
Query 1066 TTAACACTGGTTTTGATGGTCCATATGGCTATCAT 1100
|||||||||||||| ||||||||| || |||||||
Sbjct 1138 TTAACACTGGTTTTCATGGTCCATGTGACTATCAT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5