BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497279
Length=2174
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20520.1 | Symbols: SVL3 | SHV3-like 3 | chr3:7162828-716585... 3461 0.0
> AT3G20520.1 | Symbols: SVL3 | SHV3-like 3 | chr3:7162828-7165859
FORWARD LENGTH=2324
Length=2324
Score = 3461 bits (1874), Expect = 0.0
Identities = 2080/2180 (95%), Gaps = 12/2180 (1%)
Strand=Plus/Plus
Query 1 GAAAGCTCTCCACTACCATGGCGTGCCCTAGAGTGATTTTTCTGATTCTGATCAAGTTCT 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1 GAAAGCTCTCCACTACCATGGCGTGTCCTAGAGTGATTTTTCTGATTCTGATCACGTTCT 60
Query 61 TCATACTACAGACTGCTTTATCAAGTTCTTGGAAAACATTAAGTGGGAAACCTCCGGCTG 120
|||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 61 TCATTTTACAGACTGCTTTCTCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120
Query 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180
Query 181 TGGTGAATATAACAACTTCACCAGAAGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
Query 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAATCTTCACAATGGTTCTAATGTCATAAGCA 300
||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
Sbjct 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAAGCTTGACAATGGTTCTAACGTCATAAGAA 300
Query 301 TTTACCCAAATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGACCCACATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360
Query 361 TGAAATTGGCCCAGGGTGTTATCTCAAGACCAGAAATATTCGATGATGTTTCCTCGATAT 420
|||||||||| ||||||||| ||||||||||| | |||||||||||||| ||||||||||
Sbjct 361 TGAAATTGGCACAGGGTGTTGTCTCAAGACCATATATATTCGATGATGTATCCTCGATAT 420
Query 421 TGCCTATTGAAGAAGTAGCAAAGTTGACAGATTCAGGCCTCTGGTTGAACATTCAGGACA 480
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCTTCAGGCCTCTGGTTGAACATTCAGGACA 480
Query 481 GTGCTTTCTACACGCAACACAATTTGAGTATGAGAAACTCTGTTATCTCTCTATCAAGAC 540
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GTGCTTTCTACGCAAAACACAATTTGAGTATGAGAAACTCTGTTGTCTCTCTATCAAGAC 540
Query 541 GCCTGATAGTTAACTTCATATCTTCTCCAGAGATCAGTTTCCTGAAGAGCATGAAAAACA 600
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GCCTGAAAGTTAACTTCATATCTTCTCCAGGGATCAGTTTCCTGAAGAGCATGAAAAACA 600
Query 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAAGTTTCTAAAACAAGA-CGACATAGAA 659
||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||||
Sbjct 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGAAC-ACATAGAA 659
Query 660 CCCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATTTAAGTTATATAAGAACCTTT 719
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 660 CCCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTT 719
Query 720 TCTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTTGATTCAGCTCTTTACCTA 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 TCTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTAGATTCAGCTCTTTACCTA 779
Query 780 CAACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGTTTACAAGTTTTCGCCTCG 839
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 CAACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGCTTACAAGTTTTCGCCTCG 839
Query 840 GAGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTAT 899
Query 900 TTATCTTTCATTGACAACGGAAACTTCTCGGTTGATGGTTTCCTATCAGACTTTCCGGTG 959
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 900 CTATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCCTATCAGACTTCCCGGTG 959
Query 960 ACTCCATATCGAGCCATCAATTGTTTCTCTCATTTGGACACC-AAGAA-AGCTAAGGAGC 1017
||||||||||||||||||||||| ||||||||| ||||| || || || |||||||||||
Sbjct 960 ACTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGAC-CCTAA-AAGAGCTAAGGAGC 1017
Query 1018 AAGCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAGCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTG 1077
Query 1078 ACTTGGCGTATCAGAGAGCTGCAACCGACGGGGCTGACATTCTTGATTGCAATGTCCAGA 1137
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1078 ACTTGGCGTATCAGAGAGCTGCAAGCGACGGGGCTGATATTCTTGATTGCAATGTCCAGA 1137
Query 1138 TGTCTAAAGACAAGATTCCCTTTTGTATGAGCTCCATTGATCTTATAAACAGCACTAATG 1197
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 TGTCTAAAGACAAGATTCCCTTTTGTATGAGCTCCTTTGATCTTATAAACAGCACTAATG 1197
Query 1198 TCATCGAAACAAGCTTTAGAAATCTGTCATCAGTAGCTTCAGAGATTCAACC-ACAGAGA 1256
|||||||||||||||| ||||||||||||||||||| |||||||||| |||| || ||||
Sbjct 1198 TCATCGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATT-AACCCACGGAGA 1256
Query 1257 AGTGGGATCTACACTTTCAGCCTGACCATGTCTCAGATACAAACCTTGAAGCCTACTATT 1316
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 AGTGGTATCTACACTTTTAGCCTGACCATGTCTCAGATACAAACCTTGAAGCCCACTATT 1316
Query 1317 TCGAATCTTGAAAGGGACTCTGGTTTATTCAGAAACCCAAGAAACAAGAAGGCTGGAAAG 1376
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1317 TCGAATCTTGAAAAGGACTCTGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGGGAAG 1376
Query 1377 TTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCATTACAGCTCTCTCTTAGGCATC 1436
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1377 TTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCGTTACAGCTCTCTCTTAGGCCTC 1436
Query 1437 TTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATAAGCGTGGTCGAT 1496
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1437 TTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGTCGAT 1496
Query 1497 GCGGTACTAGATGAATTGAAGAGAGCTACTAATCAGCAAAACAAGACAAGTGCAAGAACA 1556
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1497 GCGGTACTAGATGAATTGAAGAGAGCTACTACTCAACAAAACAAGACAAGTGCAAGAACA 1556
Query 1557 ATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAACAAAATG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAACAAAATG 1616
Query 1617 AATCATGACGAGCTAGTCTATAGAGTCGAGGAAAACATCGGTGATGTAGCAGATTCGGCG 1676
|||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 1617 AATCATGACGAGCTGGTCTATAGAGTCGACGACAACATCCGTGATGTAGCAGATTCGGCG 1676
Query 1677 ATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCAGTCTTTCCC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCAGTCTTTCCC 1736
Query 1737 TACGTAGGGTTTATCACCCTT-ACGCAGGGGACAAATGTTGTTTCAAAGCTAAAATCAAG 1795
||| ||||||||||| |||| | ||| ||||||| ||| |||||||||||||||||
Sbjct 1737 TACAAAGGGTTTATCATCCTTGAAA-AGGAGACAAATATTGCTTCAAAGCTAAAATCAAA 1795
Query 1796 CGGGCTTCGTGTTTACGTAGAAAGATTTAGCAACGAGTTTGTAACTCAAGCATTTGACTT 1855
|||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1796 CGGGCTTCGTGTTTACGTTGAAAGATTTAGCAACGAGTGTGTAACTCATGCATTTGACTT 1855
Query 1856 TTACGAGGATCCAACGTTGGAGATAGACTCTTTTGTCCGCGATATCCAAATTGATGGCAT 1915
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1856 TTACGATGATCCAACGTTAGAGATAGACTCTTTTGTCCGCGATGTCCAAATTGATGGCAT 1915
Query 1916 CATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACCAGTGTTACGGCAAATT 1975
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1916 CATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACAAGTGTTACGGCGAATT 1975
Query 1976 TGTTCTGCCTGA-AACCGGTGAGCTCAGAACTTTCGGGAATCCATTGCTTCTTCCACCAG 2034
|| |||| || | |||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1976 TGGTCTGACT-ACAACCGGTGAGCTCATAACTTTCGCGAATCCAATGCTTCTTCCACCAG 2034
Query 2035 CTGAAGCTCCATATCCATTACTAGGTGACTCAGATGTGACGGAACCACCATTGCCTGAAG 2094
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 2035 CTGAAGCTCCATATCCAGCACTACTTGACTCAGATGTGACGGAACCACCATTGCCTGAAG 2094
Query 2095 TAAGAAGTCAGCCTCCTGCTTTTTCACCATCAAAGGCAGAGGAAAAAGCAATAGAAGTTC 2154
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2095 CAAGAAGTCAGCCTCCTGCTTCTTCTCCATCAAAGGCAGAGGAAAAAGCAATAGAAGTTC 2154
Query 2155 CCTTTGCATTTATAGCCATG 2174
||||||||||||||||||||
Sbjct 2155 CCTTTGCATTTATAGCCATG 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107830770660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5