BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497279 Length=2174 Score E Sequences producing significant alignments: (Bits) Value AT3G20520.1 | Symbols: SVL3 | SHV3-like 3 | chr3:7162828-716585... 3461 0.0 > AT3G20520.1 | Symbols: SVL3 | SHV3-like 3 | chr3:7162828-7165859 FORWARD LENGTH=2324 Length=2324 Score = 3461 bits (1874), Expect = 0.0 Identities = 2080/2180 (95%), Gaps = 12/2180 (1%) Strand=Plus/Plus Query 1 GAAAGCTCTCCACTACCATGGCGTGCCCTAGAGTGATTTTTCTGATTCTGATCAAGTTCT 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1 GAAAGCTCTCCACTACCATGGCGTGTCCTAGAGTGATTTTTCTGATTCTGATCACGTTCT 60 Query 61 TCATACTACAGACTGCTTTATCAAGTTCTTGGAAAACATTAAGTGGGAAACCTCCGGCTG 120 |||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| Sbjct 61 TCATTTTACAGACTGCTTTCTCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120 Query 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180 Query 181 TGGTGAATATAACAACTTCACCAGAAGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240 Query 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAATCTTCACAATGGTTCTAATGTCATAAGCA 300 ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| | Sbjct 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAAGCTTGACAATGGTTCTAACGTCATAAGAA 300 Query 301 TTTACCCAAATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTGACCCACATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360 Query 361 TGAAATTGGCCCAGGGTGTTATCTCAAGACCAGAAATATTCGATGATGTTTCCTCGATAT 420 |||||||||| ||||||||| ||||||||||| | |||||||||||||| |||||||||| Sbjct 361 TGAAATTGGCACAGGGTGTTGTCTCAAGACCATATATATTCGATGATGTATCCTCGATAT 420 Query 421 TGCCTATTGAAGAAGTAGCAAAGTTGACAGATTCAGGCCTCTGGTTGAACATTCAGGACA 480 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCTTCAGGCCTCTGGTTGAACATTCAGGACA 480 Query 481 GTGCTTTCTACACGCAACACAATTTGAGTATGAGAAACTCTGTTATCTCTCTATCAAGAC 540 ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 481 GTGCTTTCTACGCAAAACACAATTTGAGTATGAGAAACTCTGTTGTCTCTCTATCAAGAC 540 Query 541 GCCTGATAGTTAACTTCATATCTTCTCCAGAGATCAGTTTCCTGAAGAGCATGAAAAACA 600 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 541 GCCTGAAAGTTAACTTCATATCTTCTCCAGGGATCAGTTTCCTGAAGAGCATGAAAAACA 600 Query 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAAGTTTCTAAAACAAGA-CGACATAGAA 659 ||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||| Sbjct 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGAAC-ACATAGAA 659 Query 660 CCCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATTTAAGTTATATAAGAACCTTT 719 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 660 CCCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTT 719 Query 720 TCTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTTGATTCAGCTCTTTACCTA 779 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 720 TCTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTAGATTCAGCTCTTTACCTA 779 Query 780 CAACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGTTTACAAGTTTTCGCCTCG 839 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 780 CAACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGCTTACAAGTTTTCGCCTCG 839 Query 840 GAGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTAT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GAGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTAT 899 Query 900 TTATCTTTCATTGACAACGGAAACTTCTCGGTTGATGGTTTCCTATCAGACTTTCCGGTG 959 |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 900 CTATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCCTATCAGACTTCCCGGTG 959 Query 960 ACTCCATATCGAGCCATCAATTGTTTCTCTCATTTGGACACC-AAGAA-AGCTAAGGAGC 1017 ||||||||||||||||||||||| ||||||||| ||||| || || || ||||||||||| Sbjct 960 ACTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGAC-CCTAA-AAGAGCTAAGGAGC 1017 Query 1018 AAGCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 AAGCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTG 1077 Query 1078 ACTTGGCGTATCAGAGAGCTGCAACCGACGGGGCTGACATTCTTGATTGCAATGTCCAGA 1137 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1078 ACTTGGCGTATCAGAGAGCTGCAAGCGACGGGGCTGATATTCTTGATTGCAATGTCCAGA 1137 Query 1138 TGTCTAAAGACAAGATTCCCTTTTGTATGAGCTCCATTGATCTTATAAACAGCACTAATG 1197 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1138 TGTCTAAAGACAAGATTCCCTTTTGTATGAGCTCCTTTGATCTTATAAACAGCACTAATG 1197 Query 1198 TCATCGAAACAAGCTTTAGAAATCTGTCATCAGTAGCTTCAGAGATTCAACC-ACAGAGA 1256 |||||||||||||||| ||||||||||||||||||| |||||||||| |||| || |||| Sbjct 1198 TCATCGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATT-AACCCACGGAGA 1256 Query 1257 AGTGGGATCTACACTTTCAGCCTGACCATGTCTCAGATACAAACCTTGAAGCCTACTATT 1316 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1257 AGTGGTATCTACACTTTTAGCCTGACCATGTCTCAGATACAAACCTTGAAGCCCACTATT 1316 Query 1317 TCGAATCTTGAAAGGGACTCTGGTTTATTCAGAAACCCAAGAAACAAGAAGGCTGGAAAG 1376 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1317 TCGAATCTTGAAAAGGACTCTGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGGGAAG 1376 Query 1377 TTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCATTACAGCTCTCTCTTAGGCATC 1436 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1377 TTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCGTTACAGCTCTCTCTTAGGCCTC 1436 Query 1437 TTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATAAGCGTGGTCGAT 1496 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1437 TTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGTCGAT 1496 Query 1497 GCGGTACTAGATGAATTGAAGAGAGCTACTAATCAGCAAAACAAGACAAGTGCAAGAACA 1556 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 1497 GCGGTACTAGATGAATTGAAGAGAGCTACTACTCAACAAAACAAGACAAGTGCAAGAACA 1556 Query 1557 ATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAACAAAATG 1616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 ATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAACAAAATG 1616 Query 1617 AATCATGACGAGCTAGTCTATAGAGTCGAGGAAAACATCGGTGATGTAGCAGATTCGGCG 1676 |||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||| Sbjct 1617 AATCATGACGAGCTGGTCTATAGAGTCGACGACAACATCCGTGATGTAGCAGATTCGGCG 1676 Query 1677 ATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCAGTCTTTCCC 1736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 ATCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCAGTCTTTCCC 1736 Query 1737 TACGTAGGGTTTATCACCCTT-ACGCAGGGGACAAATGTTGTTTCAAAGCTAAAATCAAG 1795 ||| ||||||||||| |||| | ||| ||||||| ||| ||||||||||||||||| Sbjct 1737 TACAAAGGGTTTATCATCCTTGAAA-AGGAGACAAATATTGCTTCAAAGCTAAAATCAAA 1795 Query 1796 CGGGCTTCGTGTTTACGTAGAAAGATTTAGCAACGAGTTTGTAACTCAAGCATTTGACTT 1855 |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1796 CGGGCTTCGTGTTTACGTTGAAAGATTTAGCAACGAGTGTGTAACTCATGCATTTGACTT 1855 Query 1856 TTACGAGGATCCAACGTTGGAGATAGACTCTTTTGTCCGCGATATCCAAATTGATGGCAT 1915 |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1856 TTACGATGATCCAACGTTAGAGATAGACTCTTTTGTCCGCGATGTCCAAATTGATGGCAT 1915 Query 1916 CATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACCAGTGTTACGGCAAATT 1975 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1916 CATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACAAGTGTTACGGCGAATT 1975 Query 1976 TGTTCTGCCTGA-AACCGGTGAGCTCAGAACTTTCGGGAATCCATTGCTTCTTCCACCAG 2034 || |||| || | |||||||||||||| |||||||| ||||||| ||||||||||||||| Sbjct 1976 TGGTCTGACT-ACAACCGGTGAGCTCATAACTTTCGCGAATCCAATGCTTCTTCCACCAG 2034 Query 2035 CTGAAGCTCCATATCCATTACTAGGTGACTCAGATGTGACGGAACCACCATTGCCTGAAG 2094 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 2035 CTGAAGCTCCATATCCAGCACTACTTGACTCAGATGTGACGGAACCACCATTGCCTGAAG 2094 Query 2095 TAAGAAGTCAGCCTCCTGCTTTTTCACCATCAAAGGCAGAGGAAAAAGCAATAGAAGTTC 2154 |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2095 CAAGAAGTCAGCCTCCTGCTTCTTCTCCATCAAAGGCAGAGGAAAAAGCAATAGAAGTTC 2154 Query 2155 CCTTTGCATTTATAGCCATG 2174 |||||||||||||||||||| Sbjct 2155 CCTTTGCATTTATAGCCATG 2174 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107830770660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5