BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497281
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30400.1 | Symbols: ATOFP2, OFP2 | ovate family protein 2 | ... 1432 0.0
> AT2G30400.1 | Symbols: ATOFP2, OFP2 | ovate family protein 2
| chr2:12956561-12957554 FORWARD LENGTH=994
Length=994
Score = 1432 bits (775), Expect = 0.0
Identities = 903/963 (94%), Gaps = 16/963 (2%)
Strand=Plus/Plus
Query 1 AGATGGGGAATTACAAGTTCAGAATTTCAGAAATGCTCCCAAATGCATGGTTCCACAAGC 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 30 AGATGGGGAATTACAAGTTCAGAATTTCAGAGATGCTCCCAAATGCATGGTTCCACAAGC 89
Query 61 TCAAAGACATGACTAAACACTCTAAACCCAAAAACAAATCTTCTTCTTCTTCCTCAAACA 120
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 90 TCAAAGACGTGACTAAACACTCTAAACCCAAAAACAAAGCTTCTTCTTCTTCCTCAAACA 149
Query 121 CTTGTAGCAAGAAGAAACCTTACTCAGATTCTCTTCCTCATCACTCTGATTTCTCCAACA 180
||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 150 CTTGTAGCAAGAAGAAACCTTCCTCAGATTCTCTTCCTCAACACTCTTATTTCTCCAACA 209
Query 181 GCTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GCTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAA 269
Query 241 GGATGAGTAAAAGAAAGACACTGGGCAAGCCATCCCTTAAACCTTTGACTCCTCCT-C-C 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 270 AGATGAGTAAAAGAAAGACACTTTACAAGCCATCCCTTAAACCTTTGACTCCTCCTCCTC 329
Query 299 -TCTTGTATCTGCAAGTTTCAAGAAGAGCAAAATCAACGGTCAAGATTCGTCTTACAGCT 357
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 330 TTCTTGTATCTGCAAGTTTCAACAAGAGCAAGATCAACGATCAAGATTCGTCTTACAGCT 389
Query 358 TGTTCCCAGCTCTTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGAGG 417
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 390 TGTTCCCGGCTATTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGATG 449
Query 418 AGGAGGATGAGTTCGTTGACTTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCA 477
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ATGATGATGAGTTCGTTGAATTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCA 509
Query 478 CCAAGCACAAGGTCAAAGTGTTTGATTCGAAAGAGAAAGCTTGT-CTTGCAAGTAATCCG 536
||||||| |||||||||||| |||||||| ||||||||||||| | |||||| || |||
Sbjct 510 CCAAGCAGAAGGTCAAAGTGATTGATTCGGTAGAGAAAGCTTGTAC-TGCAAGCAAGCCG 568
Query 537 ATCAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATTAACagagagaaagaagaagaa 596
|| |||||||||||||||||||||||||||||||||||| || |||| | ||||| | |
Sbjct 569 ATTAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATT-TCA-AGAG-ATGAAGATG-A 624
Query 597 gacgatggtgaatatagagcagagaagaaATACCAAAGGCAAGTTTCTAGTGGAAGAAAA 656
| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 625 TA--A---TGAATATAAAGCCGAGAAGAAGTACCAAAGGCAAGTTTCTAGTGGAAGAAAA 679
Query 657 TCATCTGCTGGGATAAACCTCAAAAGAGTAAATTCACCTAGAATTCAACTCTCAGGTACT 716
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 680 CCATCTGCTGGGATAAACCTCAAAAGAGTGAATTCACCTAGAATTCAACTCTCAGGTACT 739
Query 717 CGTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTTGAGAGCTTCGCTGTG 776
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 740 CGTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTAGAGAGCTTCGCTGTG 799
Query 777 ATGAAGCGGTCC-TTGGATCCAAAGAAAGATTTTAGGGAATCAATGATTGAGATGATAGA 835
|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 800 ATGAAGCGGTCCGTTG-ATCCAAAGAAAGATTTCAGGGAATCAATGATTGAGATGATAGA 858
Query 836 AGAGAACAACATCAGAGCTTCAAAAGACTTGGAGGATCTTCTTGCTTGTTACCTTTCTTT 895
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||| ||||
Sbjct 859 AGAGAACAACATCAGAGCTTCGAAAGACTTGGAAGACCTTCTTGCTTGCTACCTTACTTT 918
Query 896 GAATCCAAAAGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAGCT 955
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 GAATCCAAAGGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAACT 978
Query 956 TAC 958
|||
Sbjct 979 TAC 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5