BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497282

Length=760
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30410.1 | Symbols: KIS, TFCA | tubulin folding cofactor A (...   774    0.0  


> AT2G30410.1 | Symbols: KIS, TFCA | tubulin folding cofactor A 
(KIESEL) | chr2:12959289-12960810 FORWARD LENGTH=794
Length=794

 Score =  774 bits (419),  Expect = 0.0
 Identities = 508/549 (93%), Gaps = 14/549 (3%)
 Strand=Plus/Plus

Query  1    CGAGCACACGAGTGAGTGCATATCCAATAAAATAAGAtttttttttttA-AATTCAAAAT  59
            ||||||||| |||||||||||||||| |  | |||| |||||||||| | |||||| |||
Sbjct  1    CGAGCACACAAGTGAGTGCATATCCAGT--ATTAAG-TTTTTTTTTTAATAATTCAGAAT  57

Query  60   TGAAAGCAAAGGaaaaaaaaGAAATCGAAATCGGAAAGTGTATATTGTTGTTCCTCGA-T  118
            ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
Sbjct  58   TGAAAGCAAAGGAAAAAGAAGAAATCGAAATCGGAAACTGTATATTGTTGTTCTTCGATT  117

Query  119  --TCCTCGCTCTGCGCCGCGTTCTCTCTCTCAAATTCATCGGAAGCAAAGCAACCTTCTT  176
              |||||||||| |||||||| |||||||||||||||||| |  |  |||||||||||||
Sbjct  118  CCTCCTCGCTCTACGCCGCGTCCTCTCTCTCAAATTCATC-G--G--AAGCAACCTTCTT  172

Query  177  CTCCGATCTTCGTCTGGATCCAATGGCAACGATTAGGAACTTGAAGATAAAAACATCGAC  236
            |||| ||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  173  CTCCCATCATCGCCTGAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAAC  232

Query  237  ATGTAAAAGGATTGAGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAGCTGC  296
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  233  ATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAGCGGC  292

Query  297  TAAGACTGCTGCTATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAGGAAAA  356
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  TAAGACTGCTGATATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAGGAAAA  352

Query  357  TGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGACTCGAGGCTGCATT  416
            ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct  353  TGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATT  412

Query  417  AGCTGAACTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGA  476
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  GGCTGACCTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGA  472

Query  477  GATTGAAGATGCAAAGAAGACAGTTGCGGGCT-TGGAGAAGCAGTTTCACACTGAAGATG  535
            ||| |||||||||||||||||||| ||||  | ||||||||||||||| |||||||||||
Sbjct  473  GATCGAAGATGCAAAGAAGACAGTCGCGGA-TGTGGAGAAGCAGTTTCCCACTGAAGATG  531

Query  536  CCTGATTTA  544
            |||||||||
Sbjct  532  CCTGATTTA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36922098045


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5