BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497286
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77610.1 | Symbols: | EamA-like transporter family protein ... 2390 0.0
> AT1G77610.1 | Symbols: | EamA-like transporter family protein
| chr1:29165210-29167773 FORWARD LENGTH=1577
Length=1577
Score = 2390 bits (1294), Expect = 0.0
Identities = 1492/1582 (94%), Gaps = 35/1582 (2%)
Strand=Plus/Plus
Query 1 AAAGAGTgagagagagagagTCATAGA-GGGAGACGTTTGAGATTGATGAACAGAGAATT 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 17 AAAGAGTGAGAGAGAGAGAGTCATAGACAGGAGACGTTTGAGATTGATGAACAGCGAATT 76
Query 60 CGAAACAAATCACATGGAAGAAGAGCTCTC-TTCTGCTACCGTTACCTTCTTCACTTTTC 118
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 77 CGAAACAAATCACATGGAAGAAGAGCTCTCTTTC-GCTACCGTTACCTTCTCCACTTTTC 135
Query 119 TCCTTCATTAGGGTTTTCTCTC-TATTTAGCTGCGCAGctctctctctctctttctttct 177
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |
Sbjct 136 TCCTTCATTAGGGTTTTCTCTCTTATTTAGCTGCGCAG----CTCTCTCTCTTTC--T-T 188
Query 178 caccgattcattcacttctcttaaaactcgttaatttcttctGGGTTTTTGTCTCTTTTG 237
| || |||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 189 -A-CG---GATTCAC-T-TCTTAAAACTCGTTAATTTCTTGTGGGTTTTTGTCTCTTTTG 241
Query 238 CGATCTGATTCCGAAAGTTGAGT--GA--GAGAGAATCATGGAGGAAGGAAGTATGTTCA 293
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 242 CGATCTGATTCCGAAAGTTGAGTGAGAGTGAGAGAATCATGGAGGAAGGAAGTATGTTCA 301
Query 294 GATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAACGTTACCGTAATCATCATGAACA 353
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 302 GATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGAACA 361
Query 354 AATGGATATTTCAGAAACTGGATTTCAAGTTTCCACTATCGGTTTCATGTGTTCACTTCA 413
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 362 AATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGTGTTCACTTCA 421
Query 414 TATGTTCATCGATTGGAGCTTACATCGTCATCAAAGTTCTTAAGCTTAAACCATTGATTG 473
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 422 TATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGATTG 481
Query 474 TTGTTGAACCAGAAGATCGGTGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTATCA 533
|||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTATCA 541
Query 534 ACATTGTGTTGGGAAATGTCAGTCTTCGATACATTCCTGTTTCGTTTATGCAGACGATTA 593
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 542 ACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGATTA 601
Query 594 AATCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTTGTATGGAGGAAATACTTTG 653
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 602 AGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGAGGAAATACTTTG 661
Query 654 ACTGGCGTATTTGGGCGTCTCTCGTGCCCATTGTTGGTGGAATTCTTCTGACATCTGTGA 713
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 662 ACTGGCGTATTTGGGCGTCTCTCGTGCCTATTGTTGGTGGAATTCTTCTGACATCTGTGA 721
Query 714 CTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCTTGTTTGGATGTTTAGCTACTT 773
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 722 CTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGATGTTTAGCTACTT 781
Query 774 CCACAAAGACCATTCTAGCCGAATCCCTTCTTCATGGTTACAAATTTGACAGCATAAACA 833
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 782 CCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGCATAAACA 841
Query 834 CCGTATACTATATGGCGCCTTTTGCTACCATGATTCTCGGGATACCAGCACTATTACTGG 893
|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 842 CCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTACTGG 901
Query 894 AAGGCAGTGGAATTTTGAGTTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCATCA 953
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCATCA 961
Query 954 TTATATTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTACGTCATTC 1013
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 TTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTATGTCATTC 1021
Query 1014 ACTCCACAACCGCAGTCACATTCAACGTAGCTGGAAACCTTAAGGTTGCCGTAGCTGTAT 1073
|||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1022 ACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAGGTTGCAGTGGCTGTAA 1081
Query 1074 TGGTCTCATGGTTGATATTCCGTAACCCAATATCGTATATGAATGCTGTTGGATGCGGAA 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1082 TGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAA 1141
Query 1134 TTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCGCAGCAAACAC 1193
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1142 TTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAACAC 1201
Query 1194 CAGGAACTCCTAGGACACCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCTCTTGTTA 1253
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1202 CGGGAACTCCTAGGACTCCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCACTTGTTA 1261
Query 1254 ATAATGATAAACTCGAAGGCAAAGTCTGATCTTATCCAATCCGCAGCTCAGTTTAGCACT 1313
||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
Sbjct 1262 ATAATGATAAACTCGAAGGCAAAGTCTGATCTTCTTCATTCCGCAGCTCAGTTTAG---T 1318
Query 1314 CACTGTCACTGGATCAGGGTACTGCGGAAGAGAAGCATTCACACA-G---TGTTGAATTT 1369
||| |||||| ||||||| |||| ||||||||||||| ||||| | ||||||||||
Sbjct 1319 -ACT--CACTGGTTCAGGGTGCTGCAGAAGAGAAGCATTGACACAAGGGGTGTTGAATTT 1375
Query 1370 TTACTAAATATGCGTTTTACTCAAAAACCTTAATAGAGAAAAGTTACAtttttttttttC 1429
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1376 TTACTAAATATGCATTTTACTCAAAAACCTTAGTAGAGAAAAGTTACATTTTTTTTTTTC 1435
Query 1430 GTTTTGATTTAAGCTCGTAGAAGAGATAATGGTTCCTACTA-T-TT-ATATCTCTGTGAA 1486
|||||||||| |||||||||||||||||||||||||||||| | || |||| ||||||||
Sbjct 1436 GTTTTGATTTGAGCTCGTAGAAGAGATAATGGTTCCTACTACTATTTATATTTCTGTGAA 1495
Query 1487 GTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCTGAAGGAGAGTACTACTAC 1546
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1496 GTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCCGAAGGAGAGAACTACTAC 1555
Query 1547 ATTAATTGCTTCTTCTTTTTTG 1568
||| ||||||||||||||||||
Sbjct 1556 ATTTATTGCTTCTTCTTTTTTG 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77409240390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5