BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497291
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29020.1 | Symbols: | Rab5-interacting family protein | chr... 857 0.0
> AT2G29020.1 | Symbols: | Rab5-interacting family protein | chr2:12469724-12471700
FORWARD LENGTH=819
Length=819
Score = 857 bits (464), Expect = 0.0
Identities = 648/728 (89%), Gaps = 48/728 (7%)
Strand=Plus/Plus
Query 1 TAGATCTGAATCAGAGAATTGGTAAGAAGTAAGAACCCTAGC-TAAGATTCGTCCGATTC 59
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||
Sbjct 7 TAGATCTGAATCAGAGAATTGGTAAGTAGTAAGAACCCTAGCTTTAGATTCGTCAGATTC 66
Query 60 TGATTACTCGAATCAAAGCAGGGTTTTTGAGACT-AAAATCCGATCTTGTGAAGTGGGTT 118
|||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||
Sbjct 67 TGATTACTCGAATCAAAGCAGGGTTTTTGACACTAAAAATCCGATCTCGTGAAGTGTGTT 126
Query 119 TTGCATCGAATCGGAAAATATGAAAGAAGGGAAATCATCGAA---GTCGAATCAACAAGA 175
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 127 TTGCATCGAATCGGAAAATATGAAAGAAGGGAAATCATCGAAGTCGTCGAGTCAACAAGA 186
Query 176 GCAGCATGAACAGATTTATCACCAAAACAGTCACTTGGGTTCTTTCAAATTCGCCAAATT 235
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 187 GCAGCATGAACAGATTTATCATCAAAACAGTCACTTGGGTTCTTTCAACTTCGCCAAATT 246
Query 236 GTTTGATTCTGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTGTTGCATTGGATCAG 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 247 GTTTGATTCTGAAGCTTCCTGGGACAAGGATCAACTGGGAGATGTGTTGCATTGGATCAG 306
Query 296 GCAAGTAGTTGGATTACTCTGCGGATTGGTT-TGGGGTGCGATACCTTTGGTTGGAGGGA 354
|||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| |
Sbjct 307 GCAAGTAGTTGGTTTACTCTGCGGATT-GTTGTGGGGTGCGATACCTTTGGTAGGAGGCA 365
Query 355 TATGGCTACTTCTATTTCTGGCAATCTCGTCTGGCATAGTATACGGTTACTATGCATTGA 414
||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 366 TATGGCTTCTTCTATTTCTTGCAATCTCCTCTGGCATAGTATATGGTTACTATGCATTGG 425
Query 415 TTCTAAAGATTGATGAAGAAGACTTTGGTGGTCATGCAGCTCTGCTCCAGGACGGTCTAT 474
|||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 426 TTCTAAAGATCGATGAAGAAGACTTCGGTGGTCACGCAGCTTTGCTCCAGGACGGTCTAT 485
Query 475 TTGCTTCTCTAAGCTTATTCCTGCTTGCGTGGATTCTGGTGTATAGC---T-T-G--TC- 526
||||||||||||| ||||||||||||||||||||||||||||||||| | | | ||
Sbjct 486 TTGCTTCTCTAAGTTTATTCCTGCTTGCGTGGATTCTGGTGTATAGCTTGTCTAGCTTCT 545
Query 527 --T--AG---C--T-TCT---GATAGAG--AC-AC-AGAACAAGTTTAGCAGAACGTACC 569
| || | | ||| | | ||| | | ||| |||||||||||||||||||
Sbjct 546 GATAGAGACACAGTATCTCGCGCTTGAGCTGCTCCGTGAAGAAGTTTAGCAGAACGTACC 605
Query 570 TTTCATTGTTTCTCCAGTTTACGCTGTG--C--C---C-----TTTTCTGAAGATGGGAA 617
|||||| ||||||||| |||||| |||| | | | |||||||||||||||||
Sbjct 606 TTTCATGGTTTCTCCAATTTACGATGTGCCCTTCATGCTTTTGTTTTCTGAAGATGGGAA 665
Query 618 CTAGCATTGGTAGATTTTCAAATTTTT-T-ATGGAACTTTTGGTTTCCTTTTGTTCTTGT 675
||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 666 CTAGCATTGGTAGATTTTC--ATTTTTCTGATGGAACTTTTGGTTTCCTTTTGTTCTTGT 723
Query 676 TAATTACT 683
||||||||
Sbjct 724 TAATTACT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5