BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497293
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06910.1 | Symbols: ULP1A, ELS1, AtULP1a | UB-like protease ... 970 0.0
> AT3G06910.1 | Symbols: ULP1A, ELS1, AtULP1a | UB-like protease
1A | chr3:2178630-2181197 REVERSE LENGTH=1793
Length=1793
Score = 970 bits (525), Expect = 0.0
Identities = 664/729 (91%), Gaps = 18/729 (2%)
Strand=Plus/Plus
Query 1 AAAATCAATCTAGGGTTTTGAACTCTGAATTGGGGGATTTTGACCTTTCAGTTTTGTGGG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 AAAACCAATCTAGGGTTTTGAACTCTGAATTGGGGGATTTTGACCTTTCAGTTTTGTGGG 73
Query 61 ATCGAATTTTGAATTTCGAGGGTTATGGTTCCTTGTGTTTCAGACCAATGGAT--GGCAT 118
||| ||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 74 ATCAAATTTTGAATTTCGAGGGTTATGGTTCCTACTGTTTCAGACCAATGGATATGG-AT 132
Query 119 GAGCAGTTACCACAAACGCAATTCCGGTTTAAACCCTTGTAAAAACTCCAGTTTCTCACA 178
| | |||||||||||| | |||||||||||||||||||| ||||| ||||||||||
Sbjct 133 G-G---TTACCACAAACGGAGCGCCGGTTTAAACCCTTGTAAACACTCCGGTTTCTCACA 188
Query 179 TTCATCAAGAACCATGGCTCCAGGAATTTACCGTTACCCAGAAGTGAAGTCTCCATTGCG 238
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 189 TTCATCAAGACCCATGGCTCCAGGAATTTACCGTTACCCAGAAGTGAAATCTTCGTTGCG 248
Query 239 GAGACAAGTTCATGCGCCT-TCGCGGATCCTCAAGAGCGGTCGAGATCGTAGCACACGAC 297
||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||
Sbjct 249 GAGACAAGTTCATGCGCCTGT-GCGGATACTCAATAGCGGTCGAGATCGTAGCACACGAC 307
Query 298 AAGGTTCTGGTAATGTGTTGGGAACTTTTCTCACAAGGAACGATGATATGTTGAAAAGAA 357
||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||
Sbjct 308 AAGGTTCTGGTAATGTGTTGGGAACCTTTCTCACAAGGAACAATGACATGTGGAAAAGAA 367
Query 358 ATGCACTTGATTTGCCTTTGCGCTATAGAACGGATAGAGAAGTGGTTGATGTTGGTGATG 417
|||||||||||| | |||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 368 ATGCACTTGATTCGTCTTTACGCTATAGAACGGATAGAGAAGTAATTGATGTTGATGATG 427
Query 418 AGCTTGGAGATGTGGAAATGATATCTGATGATACAAGTAGGGAGGGTCTCGGAAACGTGG 477
||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 428 AGCTTGGAGATGTTGAAATGATATCTGATGATACAAGTAGGGAGGGTGTCGAAAACGTGG 487
Query 478 CTATGGAGGTGGACGAGGTGGCAGAGA---------TGGGAAATGGATTGTTTTCTGAGG 528
||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 488 CTATGGAGGTGGACGAGGTGGAAGAGAAGGCGGAGATGGGAAATGGATTGTTTTCTGAGG 547
Query 529 TTGTTAGTATGAAAAATGGGAGCTTAAGGGTGGATGAATGTTCTCAAGATAATAGTAGTT 588
||| ||| |||||||||||||||| ||||||| |||||||||| ||| |||||||||||
Sbjct 548 TTGCCAGTCTGAAAAATGGGAGCTTGAGGGTGGGTGAATGTTCTAAAGCTAATAGTAGTT 607
Query 589 CACTCGTTGTGAATCGCCCTGTGACCGATGTCACGAGTTTTGAAGCATACAGAAAGGTTC 648
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 608 CACTCGTTGTGAATCGCCCTGTGACTGATGTCACAAGTTTTGAAGCATACAGAAAGGTTC 667
Query 649 TCCAGAGTGCTGAGAACCGGACTTCGAAACTGAAAGACAGAGGCTTTGGTGATATTTTGA 708
| ||||||||| |||||||||||| |||||||||||||||||||||| |||| |||| |
Sbjct 668 TTGAGAGTGCTGTGAACCGGACTTCTAAACTGAAAGACAGAGGCTTTGTTGATTTTTTTA 727
Query 709 AAGAAAGAG 717
|||| ||||
Sbjct 728 AAGAGAGAG 736
Score = 726 bits (393), Expect = 0.0
Identities = 542/608 (89%), Gaps = 33/608 (5%)
Strand=Plus/Plus
Query 1035 CAA-ATATTTGTCCCTATCCATATGAACATCCAATGGACTTTGGCTGTGATTAATATAAA 1093
||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1155 CAAGATATTTATCCCTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAA 1214
Query 1094 GGACCGGAAATTCCAGTATCTCGACTCATTCAAAGGAAGGGAGCCTAAAATCCTCGATGC 1153
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1215 GGACCAGAAATTCCAGTATCTTGACTCTTTCAAAGGAAGGGAGCCTAAAATCCTCGATGC 1274
Query 1154 ACTGG-TAG-TA--TT-T-GA-G--CT-A--GAT---ACT----TTG---TCGATG-AA- 1189
||||| ||| || || | || | | | ||| | | | | | |||| ||
Sbjct 1275 ACTGGCTAGATACTTTGTCGATGAAGTGAGGGATAAGAGTGAAGTAGACCTTGATGTAAG 1334
Query 1190 TCGATGGAGACAAGAATTTGTCCAGGACCTTCCGATGCAGAGAATTGGATTCGATTGTGG 1249
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1335 TCGATGGAGACAAGAATTTGTCCAGGACCTTCCAATGCAGAGAAATGGATTCGATTGTGG 1394
Query 1250 AATGTTTATGGTAAAATACATCGACTTCTACAGCAGAGGTCTGGATCTTTGTTTTGCTCA 1309
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1395 AATGTTTATGGTGAAATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCA 1454
Query 1310 GGAACAAATGCCATATTTCCGGGATAGGACAGCGAAGGAGA---TGCAACTGAAAGCCGA 1366
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1455 GGAACAAATGCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTGAAAGCCGA 1514
Query 1367 GTGATGTCAGCATAATAAGGAAACTCTTAAAGAATAGTTTTGAAAGGTCTTCTTCTTCTT 1426
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1515 GTGATGCCAGCATAATAAGGAAACTCTTAAAGAATAGTTTTGAA-GTTCTTCTTCTTCTT 1573
Query 1427 CATGTAGATAGTGTTGAGAAAGTTAGATGCACACTT-ACGTGTTTGATAATTTGATGTAC 1485
|||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1574 CATGTAGATAGTATTTAGCAAGTTAGATGCACACTTTACGTGTTTGATAATTTGATGTAC 1633
Query 1486 ATGGCAAAGTGTAACAATGTGGTTCTCTGATGATGAGGCTTGATAGTGAAACTCGAATTA 1545
|| | |||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1634 ATAGAAAAGGGTAACAATGTGGTTCTCTGATGATCAGGCTTGATAGTGAAATTCGAATTG 1693
Query 1546 TTGTTTAAAGATTCTA-TTTACACTATCAGATACTCTGATTTTGGATTTTGATATTATAT 1604
|||||||||||||||| ||| || |||||||||||||||||||| ||| || |||||| |
Sbjct 1694 TTGTTTAAAGATTCTAGTTT-CA-TATCAGATACTCTGATTTTGAATTCTGGTATTATTT 1751
Query 1605 TTGTACTT 1612
||||||||
Sbjct 1752 TTGTACTT 1759
Score = 364 bits (197), Expect = 1e-99
Identities = 224/237 (95%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 714 AGAGAGGAGGAGACAGCAGTCAACCGTGCATTCTCCGCTAATGACTCAAACATCTTGGTT 773
|||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 829 AGAGAGGAGGAGACAGCAGTCAGGCGTGCATTCTCAGCTAATGATTCAAACATCTTGGTT 888
Query 774 ACACATAAGAACTCAAATATTGACATTACAGGGAAAATCCTAAGGTGCCTTAAACCAGGT 833
|| |||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||
Sbjct 889 ACTCATAAGAACTCAAATATTGATATTACCGGGAAAATCTTGAGGTGCCTTAAACCAGGC 948
Query 834 GAATGGTTGAACGATGAGGTCATTAATCTTTATCTGGTATTGCTGAAAGAAAGGGAAGCT 893
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 949 AAATGGTTGAACGATGAGGTCATTAATCTTTATATGGTATTGCTGAAAGAAAGGGAAGCT 1008
Query 894 AGAGAACCAAAGAAGTTTCTTAAATGTCATTTTT-CAATACATTTTTCTTCACTAAG 949
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1009 AGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATACATTTTTCTTCACTAAG 1065
Score = 95.3 bits (51), Expect = 2e-18
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 951 GCAGTCAGAAGATGGACATCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGAAAAG 1010
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1099 GCAGTGAGAAGATGGACTTCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGACAAG 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5